Variant report

Variant	rs72646168
Chromosome Location	chr17:56335360-56335361
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:56334490..56336632-chr17:56338727..56340898,2	K562	blood:
2	chr17:56331625..56333266-chr17:56334060..56336378,2	K562	blood:
3	chr17:56334490..56337781-chr17:56338727..56342082,4	K562	blood:
4	chr17:56333407..56336617-chr17:56406143..56410621,4	K562	blood:

Variant related genes	Relation type
ENSG00000005379	Chromatin interaction
ENSG00000265206	Chromatin interaction
ENSG00000265148	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10754304	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1396319	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1508504	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1567293	0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1703027	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17131012	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1988676	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2136091	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4589092	1.00[EUR][1000 genomes]
rs483211	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs506796	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs552443	1.00[EUR][1000 genomes]
rs569106	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6676374	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs699532	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs699533	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs699546	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72646159	1.00[EUR][1000 genomes]
rs72646160	1.00[EUR][1000 genomes]
rs72646161	1.00[EUR][1000 genomes]
rs72646167	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7416000	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7522543	0.94[ASN][1000 genomes]
rs7547180	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs986557	0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs997077	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3451149	chr17:56229571-56670163	Enhancers Bivalent Enhancer Active TSS Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	262 gene(s)	inside rSNPs	diseases
2	nsv517229	chr17:56253587-56450524	Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	222 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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