Variant report

Variant	rs61770613
Chromosome Location	chr1:90703415-90703416
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10922806	0.94[EUR][1000 genomes]
rs10922808	0.95[EUR][1000 genomes]
rs12121982	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12139290	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4301617	0.95[EUR][1000 genomes]
rs4475731	0.83[EUR][1000 genomes]
rs61770612	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61770614	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61770626	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61770627	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61770628	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61770633	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61770635	0.83[EUR][1000 genomes]
rs72646166	0.83[EUR][1000 genomes]
rs74100368	0.95[EUR][1000 genomes]
rs7532538	0.83[EUR][1000 genomes]
rs7540662	0.83[EUR][1000 genomes]
rs7546643	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv546803	chr1:90679734-90777717	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:90692000-90706200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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