Variant report

Variant	rs61770628
Chromosome Location	chr1:90743918-90743919
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10922806	0.93[EUR][1000 genomes]
rs10922808	0.94[EUR][1000 genomes]
rs12121982	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12139290	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4301617	0.94[EUR][1000 genomes]
rs4475731	0.87[EUR][1000 genomes]
rs61770612	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61770613	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61770614	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61770626	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61770627	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61770633	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61770635	0.87[EUR][1000 genomes]
rs72646166	0.87[EUR][1000 genomes]
rs74100368	0.94[EUR][1000 genomes]
rs7532538	0.87[EUR][1000 genomes]
rs7540662	0.87[EUR][1000 genomes]
rs7546643	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv546803	chr1:90679734-90777717	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv524317	chr1:90729744-90836739	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:90736200-90752000	Weak transcription	Aorta	Aorta
2	chr1:90741200-90746600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr1:90742000-90747200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr1:90743400-90746600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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