Variant report

Variant	rs4304198
Chromosome Location	chr6:113897377-113897378
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs2046170	0.83[AMR][1000 genomes]
rs4342454	0.83[AMR][1000 genomes]
rs4392745	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4486052	0.83[AMR][1000 genomes]
rs4945956	0.83[AMR][1000 genomes]
rs4945958	0.87[AFR][1000 genomes]
rs6568798	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6568799	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6568800	0.83[AMR][1000 genomes]
rs6568801	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6940464	0.83[AMR][1000 genomes]
rs7763457	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9400634	0.83[AMR][1000 genomes]
rs9488214	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916294	chr6:113518489-113904305	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113895800-113900400	Weak transcription	Stomach Mucosa	stomach
2	chr6:113896000-113900200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr6:113897200-113897400	Weak transcription	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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