Variant report

Variant	rs6940464
Chromosome Location	chr6:113893979-113893980
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1556869	0.87[AFR][1000 genomes]
rs1556870	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2046170	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4304198	0.83[AMR][1000 genomes]
rs4337960	0.85[AMR][1000 genomes]
rs4342454	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4392745	0.83[AMR][1000 genomes]
rs4486052	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4945956	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6568798	0.83[AMR][1000 genomes]
rs6568799	0.83[AMR][1000 genomes]
rs6568800	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6568801	0.83[AMR][1000 genomes]
rs7763457	0.83[AMR][1000 genomes]
rs9400634	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9488214	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916294	chr6:113518489-113904305	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113886400-113895400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr6:113887800-113895400	Weak transcription	Colon Smooth Muscle	Colon
3	chr6:113892600-113895400	Weak transcription	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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