Variant report

Variant	rs9488214
Chromosome Location	chr6:113892102-113892103
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs2046170	0.83[AMR][1000 genomes]
rs4304198	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4342454	0.83[AMR][1000 genomes]
rs4392745	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4486052	0.83[AMR][1000 genomes]
rs4945956	0.83[AMR][1000 genomes]
rs6568798	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6568799	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6568800	0.83[AMR][1000 genomes]
rs6568801	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6940464	0.83[AMR][1000 genomes]
rs7763457	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9400634	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916294	chr6:113518489-113904305	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113886200-113892400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:113886400-113895400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:113887800-113895400	Weak transcription	Colon Smooth Muscle	Colon
4	chr6:113891000-113892200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:113891200-113892200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:113891200-113892200	Enhancers	Rectal Smooth Muscle	rectum
7	chr6:113891400-113892200	Enhancers	Osteobl	bone
8	chr6:113891400-113892600	Enhancers	Fetal Lung	lung
9	chr6:113891800-113892200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr6:113891800-113892600	Enhancers	NHDF-Ad	bronchial

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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