Variant report

Variant	rs6568798
Chromosome Location	chr6:113887139-113887140
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:113879729..113882473-chr6:113886043..113888473,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs2046170	0.83[AMR][1000 genomes]
rs4304198	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4342454	0.83[AMR][1000 genomes]
rs4392745	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4486052	0.83[AMR][1000 genomes]
rs4945956	0.83[AMR][1000 genomes]
rs6568799	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6568800	0.83[AMR][1000 genomes]
rs6568801	1.00[AMR][1000 genomes]
rs6940464	0.83[AMR][1000 genomes]
rs7763457	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9400634	0.83[AMR][1000 genomes]
rs9488214	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916294	chr6:113518489-113904305	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113885600-113887200	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr6:113886200-113892400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:113886400-113887400	Enhancers	Fetal Muscle Leg	muscle
4	chr6:113886400-113887600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr6:113886400-113895400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:113886600-113887200	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr6:113886600-113887200	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr6:113886600-113887200	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
9	chr6:113886600-113887200	Enhancers	Fetal Heart	heart
10	chr6:113886600-113887200	Weak transcription	Fetal Muscle Trunk	muscle
11	chr6:113886600-113887400	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
12	chr6:113886600-113887400	Enhancers	Brain Germinal Matrix	brain
13	chr6:113886600-113887600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
14	chr6:113886600-113887600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr6:113886600-113887800	Enhancers	Fetal Stomach	stomach
16	chr6:113886800-113887200	Enhancers	Muscle Satellite Cultured Cells	--
17	chr6:113886800-113887200	Enhancers	Adipose Nuclei	Adipose
18	chr6:113886800-113887400	Enhancers	Rectal Smooth Muscle	rectum
19	chr6:113886800-113887400	Enhancers	NHLF	lung
20	chr6:113886800-113887800	Enhancers	Colon Smooth Muscle	Colon
21	chr6:113886800-113891000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr6:113886800-113891400	Weak transcription	Fetal Lung	lung
23	chr6:113886800-113891400	Weak transcription	Osteobl	bone
24	chr6:113887000-113887800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr6:113887000-113887800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr6:113887000-113887800	Enhancers	NHDF-Ad	bronchial
27	chr6:113887000-113891200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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