Variant report

Variant	rs4308796
Chromosome Location	chr9:96570165-96570166
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96568006..96570700-chr9:96571865..96574330,2	K562	blood:
2	chr9:96568463..96571319-chr9:96587277..96588923,2	K562	blood:
3	chr9:96569200..96571602-chr9:96572830..96574829,3	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10123836	0.89[YRI][hapmap]
rs10733749	0.84[AFR][1000 genomes]
rs10761275	0.93[AFR][1000 genomes]
rs10761280	0.91[AFR][1000 genomes]
rs11788727	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12000834	0.94[AFR][1000 genomes]
rs12684597	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1987047	0.89[AFR][1000 genomes]
rs2244395	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2263354	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2265566	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2265567	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2265568	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2265569	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2265570	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2487015	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2487018	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2487019	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2487021	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2487023	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2490997	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2490998	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4075733	0.81[YRI][hapmap]
rs4415381	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4744287	0.84[YRI][hapmap]
rs57882762	0.83[AFR][1000 genomes]
rs6479512	0.81[AFR][1000 genomes]
rs7030496	0.88[AFR][1000 genomes]
rs7851269	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7854075	0.83[AFR][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96569400-96570200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr9:96569400-96570200	Enhancers	Brain Germinal Matrix	brain
3	chr9:96569400-96570400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr9:96569400-96570400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
5	chr9:96569400-96571200	Enhancers	K562	blood
6	chr9:96569600-96570400	Bivalent Enhancer	Fetal Muscle Leg	muscle
7	chr9:96569600-96571400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr9:96569800-96571400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr9:96570000-96572400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links