Variant report

Variant	rs12000834
Chromosome Location	chr9:96569757-96569758
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96568006..96570700-chr9:96571865..96574330,2	K562	blood:
2	chr9:96568463..96571319-chr9:96587277..96588923,2	K562	blood:
3	chr9:96569200..96571602-chr9:96572830..96574829,3	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10116474	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10123836	0.89[YRI][hapmap]
rs10733749	0.90[AFR][1000 genomes]
rs10739953	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10739954	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10761265	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10761275	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10761276	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10761277	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10761278	0.85[EUR][1000 genomes]
rs10761279	0.85[EUR][1000 genomes]
rs10761280	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10821224	0.85[EUR][1000 genomes]
rs10821225	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10821226	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10821227	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10992905	0.85[EUR][1000 genomes]
rs11788727	0.85[AFR][1000 genomes]
rs12684597	0.85[AFR][1000 genomes]
rs1987047	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2398873	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4075733	0.81[YRI][hapmap]
rs4308796	0.94[AFR][1000 genomes]
rs4415381	0.82[AFR][1000 genomes]
rs4744287	0.84[YRI][hapmap]
rs7030496	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7047782	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7048019	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7851269	0.85[AFR][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96569400-96570000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:96569400-96570200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr9:96569400-96570200	Enhancers	Brain Germinal Matrix	brain
4	chr9:96569400-96570400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr9:96569400-96570400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
6	chr9:96569400-96571200	Enhancers	K562	blood
7	chr9:96569600-96570400	Bivalent Enhancer	Fetal Muscle Leg	muscle
8	chr9:96569600-96571400	Enhancers	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links