Variant report

Variant	rs10761280
Chromosome Location	chr9:96569343-96569344
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96568006..96570700-chr9:96571865..96574330,2	K562	blood:
2	chr9:96568463..96571319-chr9:96587277..96588923,2	K562	blood:
3	chr9:96569200..96571602-chr9:96572830..96574829,3	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10116474	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10122041	0.81[YRI][hapmap]
rs10123836	0.88[YRI][hapmap]
rs10733749	0.87[AFR][1000 genomes]
rs10739953	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10739954	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10761265	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10761275	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10761276	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10761277	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10761278	0.85[EUR][1000 genomes]
rs10761279	0.85[EUR][1000 genomes]
rs10821224	0.85[EUR][1000 genomes]
rs10821225	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10821226	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10821227	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10992905	0.85[EUR][1000 genomes]
rs11788727	0.86[AFR][1000 genomes]
rs12000834	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12684597	0.86[AFR][1000 genomes]
rs1987047	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2398873	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4075733	0.82[YRI][hapmap]
rs4308796	0.91[AFR][1000 genomes]
rs4415381	0.82[AFR][1000 genomes]
rs4744287	0.81[LWK][hapmap];0.85[YRI][hapmap]
rs7030496	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7047782	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7048019	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7851269	0.85[AFR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10761280	BARX1	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96563800-96569400	Weak transcription	K562	blood
2	chr9:96564400-96569400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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