Variant report

Variant	rs4346581
Chromosome Location	chr3:99400966-99400967
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1111615	0.89[YRI][hapmap]
rs12330659	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28821834	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4928139	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4928214	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9818668	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9832368	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9836015	0.93[EUR][1000 genomes]
rs9842935	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9849129	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9853312	1.00[CEU][hapmap];0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9872469	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9878035	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9882718	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99384200-99405600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:99394000-99426600	Weak transcription	Stomach Smooth Muscle	stomach
3	chr3:99397000-99402800	Weak transcription	Left Ventricle	heart
4	chr3:99397200-99409600	Weak transcription	NHEK	skin
5	chr3:99397200-99411000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr3:99397400-99402400	Weak transcription	Aorta	Aorta
7	chr3:99397400-99402800	Weak transcription	Ovary	ovary
8	chr3:99397400-99408200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr3:99397600-99406000	Weak transcription	NH-A	brain
10	chr3:99397600-99419200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr3:99397600-99432000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr3:99397800-99418000	Weak transcription	NHLF	lung
13	chr3:99398000-99402600	Weak transcription	HSMMtube	muscle
14	chr3:99398600-99401400	Weak transcription	HSMM	muscle
15	chr3:99398600-99402200	Weak transcription	Rectal Smooth Muscle	rectum
16	chr3:99398600-99402600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr3:99398600-99402800	Weak transcription	Colon Smooth Muscle	Colon
18	chr3:99398600-99403200	Weak transcription	HUVEC	blood vessel
19	chr3:99398600-99403600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr3:99398800-99401600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr3:99400200-99401400	Strong transcription	Osteobl	bone
22	chr3:99400200-99401600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr3:99400200-99402200	Strong transcription	Muscle Satellite Cultured Cells	--
24	chr3:99400800-99406200	Weak transcription	NHDF-Ad	bronchial
25	chr3:99400800-99407600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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