Variant report

Variant	rs9853312
Chromosome Location	chr3:99386073-99386074
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12330659	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28821834	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4346581	1.00[CEU][hapmap];0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4928139	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4928214	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9818668	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9832368	0.97[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9836015	0.93[EUR][1000 genomes]
rs9842935	1.00[CEU][hapmap];0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9849129	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9872469	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9878035	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9882718	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99379200-99388600	Weak transcription	NH-A	brain
2	chr3:99382000-99390200	Genic enhancers	Muscle Satellite Cultured Cells	--
3	chr3:99383800-99389400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr3:99384000-99386200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr3:99384200-99386200	Weak transcription	Aorta	Aorta
6	chr3:99384200-99405600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr3:99385000-99386800	Genic enhancers	HSMM	muscle
8	chr3:99385200-99386600	Enhancers	HSMMtube	muscle
9	chr3:99385200-99393200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr3:99385400-99386200	Enhancers	HUVEC	blood vessel
11	chr3:99385400-99388400	Weak transcription	NHEK	skin
12	chr3:99385400-99388600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr3:99385400-99388600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr3:99385400-99389800	Enhancers	NHLF	lung
15	chr3:99385400-99392600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr3:99385400-99392600	Weak transcription	HMEC	breast
17	chr3:99385400-99393000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr3:99385600-99386200	Genic enhancers	Osteobl	bone
19	chr3:99385600-99386800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr3:99385600-99387400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr3:99385800-99386200	Enhancers	Rectal Smooth Muscle	rectum
22	chr3:99385800-99386400	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr3:99385800-99386600	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr3:99385800-99387000	Weak transcription	Adipose Nuclei	Adipose
25	chr3:99386000-99386200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr3:99386000-99386800	Genic enhancers	NHDF-Ad	bronchial

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