Variant report

Variant	rs4928214
Chromosome Location	chr3:99382536-99382537
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1111615	1.00[ASW][hapmap];1.00[LWK][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap]
rs12330659	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28821834	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4346581	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4928139	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9818668	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9832368	0.97[AFR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9836015	0.93[EUR][1000 genomes]
rs9836385	1.00[LWK][hapmap];0.97[MKK][hapmap];0.89[YRI][hapmap]
rs9842935	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9849129	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9853312	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9872469	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9878035	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9882718	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99373200-99385000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr3:99373800-99385200	Genic enhancers	Osteobl	bone
3	chr3:99377200-99382800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr3:99377800-99383400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr3:99378200-99383400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr3:99378200-99383800	Weak transcription	Right Atrium	heart
7	chr3:99378800-99382600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr3:99378800-99382800	Weak transcription	HSMM	muscle
9	chr3:99378800-99383400	Weak transcription	Aorta	Aorta
10	chr3:99379000-99384800	Weak transcription	NHLF	lung
11	chr3:99379200-99382600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr3:99379200-99385000	Weak transcription	NHEK	skin
13	chr3:99379200-99388600	Weak transcription	NH-A	brain
14	chr3:99379400-99383600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr3:99379400-99383800	Weak transcription	Rectal Smooth Muscle	rectum
16	chr3:99379400-99384800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr3:99379400-99385200	Weak transcription	Adipose Nuclei	Adipose
18	chr3:99379400-99385800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr3:99379600-99384000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr3:99379600-99384800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr3:99381000-99385400	Genic enhancers	HUVEC	blood vessel
22	chr3:99381200-99383200	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr3:99381200-99383400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr3:99381400-99383200	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr3:99381400-99383200	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr3:99381400-99383600	Enhancers	HUES64 Cell Line	embryonic stem cell
27	chr3:99381600-99382800	Weak transcription	NHDF-Ad	bronchial
28	chr3:99381600-99383200	Enhancers	H9 Cell Line	embryonic stem cell
29	chr3:99381600-99383200	Enhancers	HUES6 Cell Line	embryonic stem cell
30	chr3:99381600-99383400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr3:99381600-99383800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr3:99381800-99383000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
33	chr3:99381800-99383200	Enhancers	iPS-20b Cell Line	embryonic stem cell
34	chr3:99382000-99384000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr3:99382000-99390200	Genic enhancers	Muscle Satellite Cultured Cells	--
36	chr3:99382200-99383200	Enhancers	iPS-18 Cell Line	embryonic stem cell
37	chr3:99382400-99383000	Enhancers	iPS-15b Cell Line	embryonic stem cell
38	chr3:99382400-99383600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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