Variant report

Variant	rs9872469
Chromosome Location	chr3:99394092-99394093
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1111615	1.00[ASW][hapmap];1.00[LWK][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap]
rs12330659	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28821834	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4346581	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4928139	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4928214	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9818668	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9832368	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9836015	0.93[EUR][1000 genomes]
rs9836385	1.00[LWK][hapmap];0.97[MKK][hapmap];0.89[YRI][hapmap]
rs9842935	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9849129	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9853312	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9878035	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9882718	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99384200-99405600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:99391800-99394400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr3:99391800-99396400	Genic enhancers	Osteobl	bone
4	chr3:99391800-99396600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr3:99392600-99394600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr3:99392600-99395200	Genic enhancers	Muscle Satellite Cultured Cells	--
7	chr3:99392800-99394200	Enhancers	HSMMtube	muscle
8	chr3:99392800-99394200	Enhancers	NH-A	brain
9	chr3:99393000-99394400	Enhancers	Hela-S3	cervix
10	chr3:99393000-99395000	Strong transcription	HUVEC	blood vessel
11	chr3:99393400-99394800	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr3:99393400-99394800	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr3:99393400-99396600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr3:99393400-99396800	Weak transcription	Left Ventricle	heart
15	chr3:99393600-99394600	Enhancers	HMEC	breast
16	chr3:99393600-99396200	Weak transcription	Rectal Smooth Muscle	rectum
17	chr3:99393600-99396400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr3:99393600-99396400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr3:99393600-99396400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr3:99393600-99396400	Weak transcription	NHDF-Ad	bronchial
21	chr3:99393600-99396400	Weak transcription	NHLF	lung
22	chr3:99393600-99396600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr3:99393600-99396600	Weak transcription	Aorta	Aorta
24	chr3:99393600-99396800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr3:99393600-99396800	Weak transcription	Psoas Muscle	Psoas
26	chr3:99394000-99396200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr3:99394000-99396200	Strong transcription	HSMM	muscle
28	chr3:99394000-99396200	Weak transcription	NHEK	skin
29	chr3:99394000-99396400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr3:99394000-99396400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr3:99394000-99396400	Weak transcription	Colon Smooth Muscle	Colon
32	chr3:99394000-99426600	Weak transcription	Stomach Smooth Muscle	stomach

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