Variant report

Variant	rs4351172
Chromosome Location	chr5:35841425-35841426
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10472983	1.00[AFR][1000 genomes]
rs13182609	1.00[AFR][1000 genomes]
rs13183118	1.00[AFR][1000 genomes]
rs4311442	1.00[AFR][1000 genomes]
rs4314422	1.00[AFR][1000 genomes]
rs4323255	1.00[AFR][1000 genomes]
rs4323256	1.00[AFR][1000 genomes]
rs4326171	1.00[AFR][1000 genomes]
rs4330488	1.00[AFR][1000 genomes]
rs4631205	1.00[AFR][1000 genomes]
rs4635959	1.00[AFR][1000 genomes]
rs6451225	1.00[AFR][1000 genomes]
rs6858936	1.00[AFR][1000 genomes]
rs6859603	1.00[AFR][1000 genomes]
rs6873474	1.00[AFR][1000 genomes]
rs6880233	0.92[AFR][1000 genomes]
rs6891943	1.00[AFR][1000 genomes]
rs6893330	1.00[AFR][1000 genomes]
rs6893556	1.00[AFR][1000 genomes]
rs7725151	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022761	chr5:35775802-35902546	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv3379714	chr5:35841120-35843568	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35839000-35841800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
2	chr5:35839000-35842000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
3	chr5:35840000-35841600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
4	chr5:35840000-35841600	Enhancers	Primary T killer memory cells from peripheral blood	blood
5	chr5:35840800-35841800	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr5:35841200-35841600	Active TSS	Primary T helper memory cells from peripheral blood 1	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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