Variant report

Variant	rs6891943
Chromosome Location	chr5:35845875-35845876
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10472983	1.00[AFR][1000 genomes]
rs13182609	1.00[AFR][1000 genomes]
rs13183118	1.00[AFR][1000 genomes]
rs4311442	1.00[AFR][1000 genomes]
rs4314422	1.00[AFR][1000 genomes]
rs4323255	1.00[AFR][1000 genomes]
rs4323256	1.00[AFR][1000 genomes]
rs4326171	1.00[AFR][1000 genomes]
rs4330488	1.00[AFR][1000 genomes]
rs4351172	1.00[AFR][1000 genomes]
rs4631205	1.00[AFR][1000 genomes]
rs4635959	1.00[AFR][1000 genomes]
rs6451225	1.00[AFR][1000 genomes]
rs6858936	1.00[AFR][1000 genomes]
rs6859603	1.00[AFR][1000 genomes]
rs6873474	1.00[AFR][1000 genomes]
rs6880233	0.92[AFR][1000 genomes]
rs6893330	1.00[AFR][1000 genomes]
rs6893556	1.00[AFR][1000 genomes]
rs7725151	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022761	chr5:35775802-35902546	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35843000-35847000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr5:35844600-35846600	ZNF genes & repeats	Dnd41	blood
3	chr5:35845400-35846200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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