Variant report

Variant	rs7725151
Chromosome Location	chr5:35909519-35909520
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10042510	0.82[AFR][1000 genomes]
rs10472983	0.91[AFR][1000 genomes]
rs13182609	0.91[AFR][1000 genomes]
rs13183118	0.91[AFR][1000 genomes]
rs4311442	0.91[AFR][1000 genomes]
rs4314422	0.91[AFR][1000 genomes]
rs4323255	0.91[AFR][1000 genomes]
rs4323256	0.91[AFR][1000 genomes]
rs4326171	0.91[AFR][1000 genomes]
rs4330488	0.91[AFR][1000 genomes]
rs4351172	0.91[AFR][1000 genomes]
rs4631205	0.91[AFR][1000 genomes]
rs4635959	0.91[AFR][1000 genomes]
rs6451225	0.91[AFR][1000 genomes]
rs6858936	0.91[AFR][1000 genomes]
rs6859603	0.91[AFR][1000 genomes]
rs6873474	0.91[AFR][1000 genomes]
rs6880233	0.84[AFR][1000 genomes]
rs6891943	0.91[AFR][1000 genomes]
rs6893330	0.91[AFR][1000 genomes]
rs6893556	0.91[AFR][1000 genomes]
rs7447213	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471011	chr5:35861068-36003217	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv830261	chr5:35863084-36018048	Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1025695	chr5:35902486-36036934	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv4794	chr5:35906690-35934205	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35907600-35909600	Enhancers	Primary hematopoietic stem cells	blood
2	chr5:35907800-35909600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr5:35907800-35910000	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr5:35909000-35909600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr5:35909200-35910800	Enhancers	Dnd41	blood
6	chr5:35909400-35909600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr5:35909400-35912000	Weak transcription	Thymus	Thymus

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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