Variant report

Variant	rs6893556
Chromosome Location	chr5:35833285-35833286
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10472983	1.00[AFR][1000 genomes]
rs13182609	1.00[AFR][1000 genomes]
rs13183118	1.00[AFR][1000 genomes]
rs4311442	1.00[AFR][1000 genomes]
rs4314422	1.00[AFR][1000 genomes]
rs4323255	1.00[AFR][1000 genomes]
rs4323256	1.00[AFR][1000 genomes]
rs4326171	1.00[AFR][1000 genomes]
rs4330488	1.00[AFR][1000 genomes]
rs4351172	1.00[AFR][1000 genomes]
rs4631205	1.00[AFR][1000 genomes]
rs4635959	1.00[AFR][1000 genomes]
rs6451225	1.00[AFR][1000 genomes]
rs6858936	1.00[AFR][1000 genomes]
rs6859603	1.00[AFR][1000 genomes]
rs6873474	1.00[AFR][1000 genomes]
rs6880233	0.92[AFR][1000 genomes]
rs6891943	1.00[AFR][1000 genomes]
rs6893330	1.00[AFR][1000 genomes]
rs7725151	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022761	chr5:35775802-35902546	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35819600-35835600	Enhancers	Primary T killer memory cells from peripheral blood	blood
2	chr5:35824400-35835800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr5:35830600-35837600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr5:35830800-35833400	Enhancers	Primary T cells from cord blood	blood
5	chr5:35831000-35833600	Enhancers	Pancreatic Islets	Pancreatic Islet
6	chr5:35831000-35835200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr5:35831000-35839200	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr5:35831800-35833400	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr5:35832000-35833400	Weak transcription	Fetal Thymus	thymus
10	chr5:35832000-35833600	Weak transcription	Thymus	Thymus
11	chr5:35832000-35834800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr5:35832000-35836400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr5:35832000-35839000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr5:35832600-35833800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr5:35833000-35833400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
16	chr5:35833200-35833400	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr5:35833200-35834600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
18	chr5:35833200-35836000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
19	chr5:35833200-35839000	Enhancers	Primary T cells fromperipheralblood	blood

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