Variant report
Variant | rs4362437 |
---|---|
Chromosome Location | chr17:50241562-50241563 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
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No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | CEBPB | chr17:50241552-50241835 | HepG2 | liver: | n/a | chr17:50241655-50241666 chr17:50241694-50241705 |
No data |
No data |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
CA10 | TF binding region |
rs_ID | r2[population] |
---|---|
rs16951068 | 1.00[EUR][1000 genomes] |
rs73987494 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73987496 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73987498 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73990808 | 0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs8066895 | 1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs8070000 | 0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs8072151 | 1.00[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv492317 | chr17:50067819-50774475 | Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
No data |