Variant report

Variant	rs8072151
Chromosome Location	chr17:50228269-50228270
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 18 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs16951068	0.85[ASW][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4362437	1.00[EUR][1000 genomes]
rs73987494	1.00[EUR][1000 genomes]
rs73987496	1.00[EUR][1000 genomes]
rs73987498	1.00[EUR][1000 genomes]
rs73990808	1.00[EUR][1000 genomes]
rs8066895	1.00[EUR][1000 genomes]
rs8070000	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492317	chr17:50067819-50774475	Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:18)

SNP	Gene	Cis/trans	Tissue	Source
rs8072151	SLC16A3	trans	brain	seeQTL
rs8072151	CCR1	trans	brain	seeQTL
rs8072151	RUNX1	trans	brain	seeQTL
rs8072151	IL1B	trans	brain	seeQTL
rs8072151	CD14	trans	brain	seeQTL
rs8072151	MTHFD2	trans	brain	seeQTL
rs8072151	C5AR1	trans	brain	seeQTL
rs8072151	PLEK	trans	brain	seeQTL
rs8072151	TYMP	trans	brain	seeQTL
rs8072151	SPI1	trans	brain	seeQTL
rs8072151	FPR1	trans	brain	seeQTL
rs8072151	LY96	trans	brain	seeQTL
rs8072151	CYTH4	trans	brain	seeQTL
rs8072151	SLC1A5	trans	brain	seeQTL
rs8072151	IL4I1	trans	brain	seeQTL
rs8072151	CCL2	trans	brain	seeQTL
rs8072151	FAM129A	trans	brain	seeQTL
rs8072151	GK	trans	brain	seeQTL

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:50227200-50232200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr17:50227800-50232200	Weak transcription	HMEC	breast
3	chr17:50228000-50232200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr17:50228200-50232400	Weak transcription	NHEK	skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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