Variant report

Variant	rs73990808
Chromosome Location	chr17:50259158-50259159
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs16951068	1.00[EUR][1000 genomes]
rs4362437	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55858945	0.82[AMR][1000 genomes]
rs73987494	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73987496	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73987498	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73987623	0.82[AMR][1000 genomes]
rs8066895	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8070000	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8072151	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492317	chr17:50067819-50774475	Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:50258600-50259400	Active TSS	Pancreatic Islets	Pancreatic Islet
2	chr17:50258800-50259400	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr17:50258800-50259600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr17:50258800-50260000	Enhancers	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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