Variant report

Variant	rs73987494
Chromosome Location	chr17:50218570-50218571
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs16951068	1.00[EUR][1000 genomes]
rs4362437	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73987496	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73987498	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73990808	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8066895	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8070000	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8072151	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492317	chr17:50067819-50774475	Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:50214200-50219000	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr17:50216000-50221200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr17:50216200-50222600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr17:50216400-50219400	Weak transcription	HMEC	breast
5	chr17:50216400-50222000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr17:50216600-50219200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr17:50217000-50219200	Weak transcription	NHEK	skin
8	chr17:50218000-50219000	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr17:50218200-50218600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr17:50218200-50219200	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr17:50218200-50219200	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr17:50218200-50219400	Enhancers	H9 Cell Line	embryonic stem cell
13	chr17:50218200-50219600	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr17:50218400-50219200	Enhancers	H1 Cell Line	embryonic stem cell
15	chr17:50218400-50219200	Enhancers	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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