Variant report

Variant	rs4364548
Chromosome Location	chr7:39333079-39333080
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10447663	0.81[CEU][hapmap];0.85[CHB][hapmap];0.86[MEX][hapmap]
rs10447664	0.86[CEU][hapmap];0.84[CHB][hapmap]
rs12671242	0.84[CHB][hapmap]
rs34905355	0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35354413	0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4236357	0.99[ASN][1000 genomes]
rs4256493	0.95[ASN][1000 genomes]
rs4498450	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4720318	0.81[CEU][hapmap];0.85[CHB][hapmap];0.86[MEX][hapmap]
rs4720319	0.83[CHB][hapmap]
rs4723851	0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4723852	0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4723854	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4723855	0.85[CHB][hapmap]
rs60467141	0.99[ASN][1000 genomes]
rs6462902	0.81[CEU][hapmap];0.85[CHB][hapmap];0.81[CHD][hapmap]
rs6462905	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6462907	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6462908	0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6462909	0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6951119	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6962816	0.81[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6971051	0.81[CEU][hapmap];0.85[CHB][hapmap];0.82[MEX][hapmap]
rs7805623	0.81[CEU][hapmap];0.85[CHB][hapmap]
rs7806341	0.81[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7806608	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015572	chr7:39185895-39413053	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv538821	chr7:39185895-39413053	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv887969	chr7:39265429-39391875	Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39330200-39337200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:39332000-39333600	Weak transcription	Duodenum Mucosa	Duodenum
3	chr7:39332000-39339400	Weak transcription	Aorta	Aorta
4	chr7:39332400-39333200	Bivalent Enhancer	Fetal Muscle Leg	muscle
5	chr7:39332600-39333400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr7:39332600-39333800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr7:39333000-39333200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland

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