Variant report

Variant	rs60467141
Chromosome Location	chr7:39350393-39350394
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10447663	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10447664	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12666828	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12671242	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34905355	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35354413	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4236357	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4256493	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4338004	0.88[EUR][1000 genomes]
rs4364548	0.99[ASN][1000 genomes]
rs4498450	0.96[ASN][1000 genomes]
rs4628166	0.83[EUR][1000 genomes]
rs4720318	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4720319	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4723851	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4723852	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4723854	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4723855	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4723856	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4723857	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6462905	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6462907	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6462908	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6462909	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6951119	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6962816	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6971051	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7805623	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7806341	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7806608	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015572	chr7:39185895-39413053	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv538821	chr7:39185895-39413053	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv887969	chr7:39265429-39391875	Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39339600-39353600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:39347200-39350400	Weak transcription	Pancreas	Pancrea
3	chr7:39349400-39350800	Enhancers	H1 Cell Line	embryonic stem cell
4	chr7:39349400-39350800	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr7:39349400-39351000	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr7:39349400-39351200	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr7:39349400-39352000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr7:39349600-39351000	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr7:39349800-39350800	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr7:39350000-39350600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr7:39350000-39350800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr7:39350200-39350600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
13	chr7:39350200-39350600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr7:39350200-39350600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr7:39350200-39350600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr7:39350200-39350800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr7:39350200-39350800	Enhancers	HUES6 Cell Line	embryonic stem cell

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