Variant report

Variant	rs6971051
Chromosome Location	chr7:39352266-39352267
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:39351047..39353326-chr7:39354900..39357326,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10447663	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10447664	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12666828	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12671242	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34905355	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35354413	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4236357	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4256493	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4330591	0.80[LWK][hapmap]
rs4338004	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs4339541	0.81[LWK][hapmap]
rs4364548	0.81[CEU][hapmap];0.85[CHB][hapmap];0.82[MEX][hapmap]
rs4486096	0.83[LWK][hapmap]
rs4628166	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs4720318	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4720319	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4723851	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4723852	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4723854	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4723855	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4723856	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4723857	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60467141	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6462902	1.00[CEU][hapmap];0.92[GIH][hapmap];0.97[TSI][hapmap]
rs6462905	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6462907	1.00[CEU][hapmap];0.85[CHB][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6462908	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6462909	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6951119	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6962816	1.00[CEU][hapmap];0.85[CHB][hapmap];0.97[GIH][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7805623	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7806341	1.00[CEU][hapmap];0.85[CHB][hapmap];0.97[GIH][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7806608	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015572	chr7:39185895-39413053	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv538821	chr7:39185895-39413053	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv887969	chr7:39265429-39391875	Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6971051	C7orf36	cis	parietal	SCAN

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39339600-39353600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:39350600-39352600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr7:39350600-39353600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr7:39350600-39353600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr7:39350600-39358400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr7:39350800-39353000	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr7:39350800-39353400	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr7:39350800-39353600	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr7:39350800-39353600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr7:39350800-39353600	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr7:39350800-39355200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr7:39351000-39353400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr7:39351000-39353400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr7:39351200-39353400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr7:39352000-39352400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr7:39352200-39353800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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