Variant report

Variant	rs4367562
Chromosome Location	chr8:51204872-51204873
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10095718	0.82[ASW][hapmap];1.00[GIH][hapmap]
rs10105484	0.88[AFR][1000 genomes]
rs10504097	1.00[GIH][hapmap]
rs11987882	1.00[GIH][hapmap]
rs1450137	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs16914357	1.00[GIH][hapmap]
rs2923061	1.00[GIH][hapmap]
rs4242458	0.88[ASW][hapmap];0.85[LWK][hapmap];0.80[YRI][hapmap];0.88[AFR][1000 genomes]
rs4242459	0.80[LWK][hapmap];0.88[MKK][hapmap]
rs4341173	0.94[ASW][hapmap];0.85[LWK][hapmap];0.80[YRI][hapmap]
rs4873144	0.80[YRI][hapmap]
rs6473039	0.83[ASW][hapmap];0.85[LWK][hapmap];0.80[YRI][hapmap]
rs6991830	1.00[GIH][hapmap]
rs7000701	0.88[ASW][hapmap];1.00[GIH][hapmap]
rs7008382	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv948436	chr8:51115028-51917504	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv470212	chr8:51176635-51227506	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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