Variant report

Variant	rs6473039
Chromosome Location	chr8:51186606-51186607
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10088162	1.00[ASN][1000 genomes]
rs10095718	1.00[ASN][1000 genomes]
rs10105484	0.80[CEU][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10106151	1.00[ASN][1000 genomes]
rs10106888	1.00[ASN][1000 genomes]
rs10504097	1.00[ASN][1000 genomes]
rs10957849	1.00[ASN][1000 genomes]
rs10957877	0.82[CEU][hapmap];1.00[YRI][hapmap]
rs11786508	1.00[ASN][1000 genomes]
rs11987882	1.00[ASN][1000 genomes]
rs12335244	0.81[CEU][hapmap];1.00[YRI][hapmap]
rs1450137	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs16914265	1.00[ASN][1000 genomes]
rs16914292	1.00[ASN][1000 genomes]
rs16914316	1.00[ASN][1000 genomes]
rs16914320	1.00[ASN][1000 genomes]
rs16914468	1.00[ASN][1000 genomes]
rs16914489	1.00[ASN][1000 genomes]
rs17842001	1.00[ASN][1000 genomes]
rs2100233	0.81[CEU][hapmap];1.00[CHB][hapmap];0.92[GIH][hapmap];1.00[ASN][1000 genomes]
rs2957604	1.00[ASN][1000 genomes]
rs4242458	0.83[ASW][hapmap];0.82[CEU][hapmap];0.92[GIH][hapmap];1.00[LWK][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4300017	1.00[ASN][1000 genomes]
rs4341173	0.88[ASW][hapmap];0.82[CEU][hapmap];0.92[GIH][hapmap];1.00[LWK][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap]
rs4345571	1.00[ASN][1000 genomes]
rs4367562	0.83[ASW][hapmap];0.85[LWK][hapmap];0.80[YRI][hapmap]
rs4368993	1.00[ASN][1000 genomes]
rs4383986	1.00[ASN][1000 genomes]
rs4873140	1.00[ASN][1000 genomes]
rs4873144	1.00[YRI][hapmap]
rs55736281	1.00[ASN][1000 genomes]
rs55888325	1.00[ASN][1000 genomes]
rs56138290	1.00[ASN][1000 genomes]
rs57333617	1.00[ASN][1000 genomes]
rs59268471	1.00[ASN][1000 genomes]
rs6985348	1.00[ASN][1000 genomes]
rs6991830	1.00[ASN][1000 genomes]
rs7008382	0.83[AFR][1000 genomes]
rs7014050	1.00[ASN][1000 genomes]
rs7014377	1.00[ASN][1000 genomes]
rs73571390	1.00[ASN][1000 genomes]
rs73573556	1.00[ASN][1000 genomes]
rs73573569	1.00[ASN][1000 genomes]
rs73575356	1.00[ASN][1000 genomes]
rs73575383	1.00[ASN][1000 genomes]
rs7462415	0.92[GIH][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv948436	chr8:51115028-51917504	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv524203	chr8:51161232-51188675	Active TSS Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv470212	chr8:51176635-51227506	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv611341	chr8:51182810-51194608	ZNF genes & repeats Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv12937	chr8:51182892-51195695	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv522665	chr8:51186606-51188675	Inactive region	Chromatin interactive region	n/a	n/a	diseases
8	nsv611342	chr8:51186606-51191699	Inactive region	Chromatin interactive region	n/a	n/a	diseases
9	nsv611343	chr8:51186606-51194608	ZNF genes & repeats Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv611344	chr8:51186606-51194783	Active TSS Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv611345	chr8:51186606-51195151	Active TSS ZNF genes & repeats Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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