Variant report

Variant	rs4300017
Chromosome Location	chr8:51159028-51159029
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10088162	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10091003	1.00[CHB][hapmap]
rs10095718	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10105484	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10106151	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10106888	1.00[ASN][1000 genomes]
rs10113365	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[YRI][hapmap]
rs10283373	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs10504097	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10957842	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs10957849	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10957854	1.00[CEU][hapmap];0.91[YRI][hapmap]
rs10957877	1.00[CHB][hapmap]
rs11786508	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11987882	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11995010	1.00[CHB][hapmap]
rs11998379	1.00[CHB][hapmap]
rs12335244	1.00[CHB][hapmap]
rs12675740	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[YRI][hapmap]
rs13340583	1.00[CHB][hapmap];0.81[YRI][hapmap]
rs13340626	1.00[CHB][hapmap]
rs1450128	1.00[CHB][hapmap]
rs1460438	1.00[CHB][hapmap];0.93[YRI][hapmap]
rs1563866	1.00[CHB][hapmap]
rs16914265	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16914292	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16914316	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16914320	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16914330	1.00[CHB][hapmap]
rs16914357	1.00[CHB][hapmap]
rs16914468	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16914489	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17842001	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2100233	1.00[ASN][1000 genomes]
rs2957604	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4128670	1.00[CHB][hapmap]
rs4242458	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4295673	1.00[CHB][hapmap];0.88[YRI][hapmap]
rs4330703	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[YRI][hapmap]
rs4341173	1.00[CHB][hapmap]
rs4345571	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4368993	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4383986	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[YRI][hapmap];0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4421361	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[YRI][hapmap]
rs4548195	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs4620300	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[YRI][hapmap]
rs4873139	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs4873140	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4873444	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[YRI][hapmap]
rs55736281	1.00[ASN][1000 genomes]
rs55888325	1.00[ASN][1000 genomes]
rs56138290	1.00[ASN][1000 genomes]
rs57333617	1.00[ASN][1000 genomes]
rs59268471	1.00[ASN][1000 genomes]
rs6985348	1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6985863	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[YRI][hapmap]
rs6987003	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[YRI][hapmap]
rs6991830	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7000297	1.00[CEU][hapmap];0.91[YRI][hapmap]
rs7000701	1.00[CHB][hapmap]
rs7001922	1.00[CHB][hapmap]
rs7002107	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[YRI][hapmap]
rs7014050	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[YRI][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7014377	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73571382	1.00[ASN][1000 genomes]
rs73571390	1.00[ASN][1000 genomes]
rs73573556	1.00[ASN][1000 genomes]
rs73573569	1.00[ASN][1000 genomes]
rs73575356	1.00[ASN][1000 genomes]
rs73575383	1.00[ASN][1000 genomes]
rs7462415	1.00[CHB][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv948436	chr8:51115028-51917504	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:51156800-51161400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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