Variant report

Variant	rs17842001
Chromosome Location	chr8:51035329-51035330
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 153 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10088162	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10091003	1.00[CHB][hapmap]
rs10095718	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10105484	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10106151	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10106888	1.00[ASN][1000 genomes]
rs10113365	1.00[CHB][hapmap]
rs10283373	1.00[CHB][hapmap]
rs10504097	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10957842	1.00[CHB][hapmap]
rs10957849	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10957877	1.00[CHB][hapmap]
rs11786508	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11987882	1.00[CHB][hapmap];0.82[YRI][hapmap];1.00[ASN][1000 genomes]
rs11995010	1.00[CHB][hapmap]
rs11998379	1.00[CHB][hapmap]
rs12335244	1.00[CHB][hapmap]
rs12675740	1.00[CHB][hapmap]
rs13340583	1.00[CHB][hapmap]
rs13340626	1.00[CHB][hapmap]
rs1450128	1.00[CHB][hapmap]
rs1460438	1.00[CHB][hapmap]
rs1563866	1.00[CHB][hapmap]
rs16914265	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16914292	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16914316	1.00[CHB][hapmap];0.90[YRI][hapmap];1.00[ASN][1000 genomes]
rs16914320	1.00[CHB][hapmap];0.84[YRI][hapmap];1.00[ASN][1000 genomes]
rs16914330	1.00[CHB][hapmap]
rs16914357	1.00[CHB][hapmap]
rs16914468	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16914489	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4242458	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4295673	1.00[CHB][hapmap]
rs4300017	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4330703	1.00[CHB][hapmap]
rs4341173	1.00[CHB][hapmap]
rs4345571	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4368993	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4383986	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4421361	1.00[CHB][hapmap]
rs4548195	1.00[CHB][hapmap]
rs4620300	1.00[CHB][hapmap]
rs4873139	1.00[CHB][hapmap]
rs4873140	1.00[ASN][1000 genomes]
rs4873444	1.00[CHB][hapmap]
rs55736281	1.00[ASN][1000 genomes]
rs57333617	1.00[ASN][1000 genomes]
rs59268471	1.00[ASN][1000 genomes]
rs6985348	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6985863	1.00[CHB][hapmap]
rs6987003	1.00[CHB][hapmap]
rs6991830	1.00[CHB][hapmap];0.89[YRI][hapmap];1.00[ASN][1000 genomes]
rs7000701	1.00[CHB][hapmap]
rs7001922	1.00[CHB][hapmap]
rs7002107	1.00[CHB][hapmap]
rs7014050	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7014377	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs73571382	1.00[ASN][1000 genomes]
rs73571390	1.00[ASN][1000 genomes]
rs73573556	1.00[ASN][1000 genomes]
rs73573569	1.00[ASN][1000 genomes]
rs73575356	1.00[ASN][1000 genomes]
rs73575383	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:90 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2759613	chr8:50873293-51137995	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2758621	chr8:50886593-51137995	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv890871	chr8:50936174-51040022	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv6184	chr8:50997525-51060432	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv539606	chr8:51006600-51057478	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1023923	chr8:51020615-51039772	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv1829361	chr8:51021638-51101126	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv508509	chr8:51021837-51041388	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv3361408	chr8:51023448-51039042	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv1034545	chr8:51027285-51039772	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv26	chr8:51027781-51044881	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv1829293	chr8:51029371-51038255	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv1831308	chr8:51029371-51038255	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
16	esv1832317	chr8:51029371-51038255	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
17	esv1833149	chr8:51029371-51038255	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
18	esv1833241	chr8:51029371-51038255	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
19	nsv437619	chr8:51029371-51039712	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
20	esv3488684	chr8:51029899-51039197	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
21	nsv611313	chr8:51029983-51035919	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
22	nsv611314	chr8:51029983-51036683	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
23	nsv611315	chr8:51029983-51037283	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
24	nsv611316	chr8:51029983-51037674	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
25	nsv611317	chr8:51029983-51038255	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
26	esv1008187	chr8:51030141-51039300	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
27	esv2475988	chr8:51030289-51038868	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
28	esv3488680	chr8:51030349-51039347	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
29	esv1830133	chr8:51030706-51038482	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
30	nsv8339	chr8:51030782-51038885	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
31	esv6927	chr8:51030863-51038531	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
32	esv3481037	chr8:51030899-51038097	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
33	esv3481038	chr8:51030899-51038097	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
34	esv2246196	chr8:51030920-51038488	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
35	esv3479190	chr8:51030956-51038437	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
36	esv3488683	chr8:51030977-51038437	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
37	esv2503933	chr8:51030980-51039024	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
38	nsv824624	chr8:51031003-51038319	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
39	esv3488682	chr8:51031007-51038380	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
40	esv3479189	chr8:51031008-51038407	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
41	esv3479188	chr8:51031016-51038403	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
42	esv3328	chr8:51031029-51038533	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
43	esv3479187	chr8:51031030-51038353	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
44	esv3488681	chr8:51031036-51038374	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
45	nsv499111	chr8:51031091-51038330	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
46	esv3479191	chr8:51031092-51038330	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
47	esv3488686	chr8:51031092-51038330	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
48	esv11512	chr8:51031112-51038335	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
49	nsv515086	chr8:51031187-51038343	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
50	nsv611318	chr8:51031221-51035802	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:51018400-51039600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr8:51031600-51038800	Weak transcription	Osteobl	bone
3	chr8:51032200-51046600	Weak transcription	Fetal Brain Male	brain
4	chr8:51034600-51038200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr8:51034800-51037800	Enhancers	Brain Germinal Matrix	brain
6	chr8:51035000-51035600	Enhancers	HUES48 Cell Line	embryonic stem cell

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