Variant report

Variant	rs12335244
Chromosome Location	chr8:51228442-51228443
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10088162	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10091003	1.00[CHB][hapmap]
rs10095718	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10105484	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10106151	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10113365	1.00[CHB][hapmap]
rs10283373	1.00[CHB][hapmap]
rs10504097	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10957842	1.00[CHB][hapmap]
rs10957849	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10957877	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs11786508	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11987882	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11995010	1.00[CHB][hapmap]
rs11998379	1.00[CHB][hapmap]
rs12675740	1.00[CHB][hapmap]
rs13340583	1.00[CHB][hapmap]
rs13340626	1.00[CHB][hapmap]
rs1450128	1.00[CHB][hapmap]
rs1450137	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs1460438	1.00[CHB][hapmap]
rs1563866	1.00[CHB][hapmap]
rs16914316	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16914320	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16914330	1.00[CHB][hapmap]
rs16914357	1.00[CHB][hapmap]
rs16914468	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16914489	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17842001	1.00[CHB][hapmap]
rs2100233	1.00[CEU][hapmap];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2957604	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4128670	1.00[CHB][hapmap]
rs4242458	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4295673	1.00[CHB][hapmap]
rs4300017	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4330703	1.00[CHB][hapmap]
rs4341173	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs4345571	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4368993	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4383986	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4421361	1.00[CHB][hapmap]
rs4548195	1.00[CHB][hapmap]
rs4620300	1.00[CHB][hapmap]
rs4873139	1.00[CHB][hapmap]
rs4873140	1.00[ASN][1000 genomes]
rs4873144	1.00[YRI][hapmap]
rs4873444	1.00[CHB][hapmap]
rs55736281	1.00[ASN][1000 genomes]
rs55888325	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56138290	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59268471	1.00[ASN][1000 genomes]
rs6473039	0.81[CEU][hapmap];1.00[YRI][hapmap]
rs6985348	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6985863	1.00[CHB][hapmap]
rs6987003	1.00[CHB][hapmap]
rs6991830	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7000701	1.00[CHB][hapmap]
rs7001922	1.00[CHB][hapmap]
rs7002107	1.00[CHB][hapmap]
rs7008382	0.82[AFR][1000 genomes]
rs7014050	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7014377	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs73573569	1.00[ASN][1000 genomes]
rs73575356	1.00[ASN][1000 genomes]
rs73575383	1.00[ASN][1000 genomes]
rs7462415	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv948436	chr8:51115028-51917504	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv6185	chr8:51213648-51237196	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv2437712	chr8:51224383-51229129	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv5640	chr8:51224773-51228586	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv2077062	chr8:51224808-51228484	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv2593415	chr8:51224848-51228925	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv1828291	chr8:51225111-51246823	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv1832233	chr8:51225111-51256438	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv1830624	chr8:51225363-51230812	Inactive region	Chromatin interactive region	n/a	n/a	diseases
11	esv1827302	chr8:51225496-51246823	Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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