Variant report

Variant	rs2957604
Chromosome Location	chr8:51250366-51250367
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10088162	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10091003	1.00[CHB][hapmap]
rs10105484	0.92[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10113365	1.00[CHB][hapmap]
rs10283373	1.00[CHB][hapmap]
rs10504097	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10957842	1.00[CHB][hapmap]
rs10957849	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10957877	0.93[CEU][hapmap];1.00[CHB][hapmap]
rs11786508	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11995010	1.00[CHB][hapmap]
rs11998379	1.00[CHB][hapmap]
rs12335244	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs12675740	1.00[CHB][hapmap]
rs13340583	1.00[CHB][hapmap]
rs13340626	1.00[CHB][hapmap]
rs1375942	0.86[YRI][hapmap]
rs1450128	1.00[CHB][hapmap]
rs1460438	1.00[CHB][hapmap]
rs1563866	1.00[CHB][hapmap]
rs16914330	1.00[CHB][hapmap]
rs16914357	1.00[CHB][hapmap]
rs16914468	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16914489	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2100233	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2923059	0.81[YRI][hapmap]
rs2957606	0.95[AFR][1000 genomes]
rs4128670	1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs4242458	0.93[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4295673	1.00[CHB][hapmap]
rs4300017	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4330703	1.00[CHB][hapmap]
rs4341173	0.93[CEU][hapmap];1.00[CHB][hapmap]
rs4345571	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4368993	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4383986	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4421361	1.00[CHB][hapmap]
rs4548195	1.00[CHB][hapmap]
rs4620300	1.00[CHB][hapmap]
rs4873139	1.00[CHB][hapmap]
rs4873140	1.00[ASN][1000 genomes]
rs4873444	1.00[CHB][hapmap]
rs55888325	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56138290	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6985348	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6985863	1.00[CHB][hapmap]
rs6987003	1.00[CHB][hapmap]
rs6991830	1.00[CHB][hapmap]
rs7000701	1.00[CHB][hapmap]
rs7001922	1.00[CHB][hapmap]
rs7002107	1.00[CHB][hapmap]
rs7014050	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7014377	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs73575356	1.00[ASN][1000 genomes]
rs73575383	1.00[ASN][1000 genomes]
rs7462415	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv948436	chr8:51115028-51917504	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv1832233	chr8:51225111-51256438	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv831312	chr8:51239772-51422844	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:51243200-51271600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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