Variant report
| Variant | rs56138290 |
|---|---|
| Chromosome Location | chr8:51255209-51255210 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10088162 | 1.00[ASN][1000 genomes] |
| rs10105484 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10504097 | 1.00[ASN][1000 genomes] |
| rs10957849 | 1.00[ASN][1000 genomes] |
| rs11786508 | 1.00[ASN][1000 genomes] |
| rs16914468 | 1.00[ASN][1000 genomes] |
| rs16914489 | 1.00[ASN][1000 genomes] |
| rs2100233 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2957604 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4128670 | 1.00[AFR][1000 genomes];0.81[EUR][1000 genomes] |
| rs4242458 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4300017 | 1.00[ASN][1000 genomes] |
| rs4345571 | 1.00[ASN][1000 genomes] |
| rs4368993 | 1.00[ASN][1000 genomes] |
| rs4383986 | 1.00[ASN][1000 genomes] |
| rs4873140 | 1.00[ASN][1000 genomes] |
| rs55888325 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6985348 | 1.00[ASN][1000 genomes] |
| rs7014050 | 1.00[ASN][1000 genomes] |
| rs7014377 | 1.00[ASN][1000 genomes] |
| rs72640716 | 1.00[AFR][1000 genomes] |
| rs72640717 | 1.00[AFR][1000 genomes] |
| rs73575356 | 1.00[ASN][1000 genomes] |
| rs73575383 | 1.00[ASN][1000 genomes] |
| rs7462415 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv916392 | chr8:50827638-51395140 | Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv948436 | chr8:51115028-51917504 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | esv1832233 | chr8:51225111-51256438 | ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv831312 | chr8:51239772-51422844 | Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:51243200-51271600 | Weak transcription | Ganglion Eminence derived primary cultured neurospheres | brain |
