Variant report

Variant	rs72640716
Chromosome Location	chr8:51101895-51101896
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs55888325	1.00[AFR][1000 genomes]
rs56138290	1.00[AFR][1000 genomes]
rs72639832	1.00[AFR][1000 genomes]
rs72639837	1.00[AFR][1000 genomes]
rs72639868	1.00[AFR][1000 genomes]
rs72640717	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2759613	chr8:50873293-51137995	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2758621	chr8:50886593-51137995	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:51100200-51102200	Enhancers	HMEC	breast
2	chr8:51100400-51102400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr8:51100600-51102200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr8:51100800-51102000	Enhancers	NH-A	brain
5	chr8:51100800-51102200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr8:51100800-51102200	Enhancers	Osteobl	bone
7	chr8:51101000-51102000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr8:51101000-51102400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr8:51101000-51104200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr8:51101200-51102000	Enhancers	NHDF-Ad	bronchial
11	chr8:51101400-51102800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr8:51101800-51102200	Enhancers	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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