Variant report

Variant	rs13340583
Chromosome Location	chr8:51128156-51128157
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10088162	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10091003	1.00[CHB][hapmap]
rs10095718	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10105484	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10106151	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10106888	1.00[ASN][1000 genomes]
rs10113365	1.00[CHB][hapmap]
rs10283373	1.00[CHB][hapmap]
rs10504097	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10957842	1.00[CHB][hapmap];0.80[YRI][hapmap]
rs10957849	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10957877	1.00[CHB][hapmap]
rs11786508	1.00[CHB][hapmap];0.84[YRI][hapmap];1.00[ASN][1000 genomes]
rs11987882	1.00[CHB][hapmap];0.81[YRI][hapmap];1.00[ASN][1000 genomes]
rs11995010	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs11998379	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs12335244	1.00[CHB][hapmap]
rs12675740	1.00[CHB][hapmap]
rs13340626	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs1450128	1.00[CHB][hapmap]
rs1460438	1.00[CHB][hapmap]
rs1563866	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs16914265	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16914292	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16914316	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16914320	1.00[CHB][hapmap];0.82[YRI][hapmap];1.00[ASN][1000 genomes]
rs16914330	1.00[CHB][hapmap]
rs16914357	1.00[CHB][hapmap]
rs16914468	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16914489	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17842001	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2100233	1.00[ASN][1000 genomes]
rs2957604	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4128670	1.00[CHB][hapmap]
rs4242458	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4295673	1.00[CHB][hapmap]
rs4300017	1.00[CHB][hapmap];0.81[YRI][hapmap];1.00[ASN][1000 genomes]
rs4330703	1.00[CHB][hapmap]
rs4341173	1.00[CHB][hapmap]
rs4345571	1.00[CHB][hapmap];0.84[YRI][hapmap];1.00[ASN][1000 genomes]
rs4368993	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4383986	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4421361	1.00[CHB][hapmap]
rs4548195	1.00[CHB][hapmap];0.81[YRI][hapmap]
rs4620300	1.00[CHB][hapmap]
rs4873139	1.00[CHB][hapmap]
rs4873140	1.00[ASN][1000 genomes]
rs4873444	1.00[CHB][hapmap]
rs55736281	1.00[ASN][1000 genomes]
rs55888325	1.00[ASN][1000 genomes]
rs56138290	1.00[ASN][1000 genomes]
rs57333617	1.00[ASN][1000 genomes]
rs59268471	1.00[ASN][1000 genomes]
rs6985348	1.00[CHB][hapmap];0.81[YRI][hapmap];1.00[ASN][1000 genomes]
rs6985863	1.00[CHB][hapmap]
rs6987003	1.00[CHB][hapmap]
rs6991830	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7000701	1.00[CHB][hapmap]
rs7001922	1.00[CHB][hapmap]
rs7002107	1.00[CHB][hapmap]
rs7014050	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7014377	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs73571382	1.00[ASN][1000 genomes]
rs73571390	1.00[ASN][1000 genomes]
rs73573556	1.00[ASN][1000 genomes]
rs73573569	1.00[ASN][1000 genomes]
rs73575356	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73575383	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73575386	0.84[AFR][1000 genomes]
rs7462415	1.00[CHB][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2759613	chr8:50873293-51137995	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2758621	chr8:50886593-51137995	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv948436	chr8:51115028-51917504	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv8341	chr8:51123911-51130847	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
7	esv2829897	chr8:51125957-51135544	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links