Variant report

Variant	rs73571390
Chromosome Location	chr8:50983686-50983687
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10088162	1.00[ASN][1000 genomes]
rs10095718	1.00[ASN][1000 genomes]
rs10106151	1.00[ASN][1000 genomes]
rs10106888	1.00[ASN][1000 genomes]
rs10504097	1.00[ASN][1000 genomes]
rs10957849	1.00[ASN][1000 genomes]
rs11786508	1.00[ASN][1000 genomes]
rs11987882	1.00[ASN][1000 genomes]
rs16914265	0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs16914292	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs16914316	1.00[ASN][1000 genomes]
rs16914320	1.00[ASN][1000 genomes]
rs16914468	1.00[ASN][1000 genomes]
rs16914489	1.00[ASN][1000 genomes]
rs17842001	1.00[ASN][1000 genomes]
rs4300017	1.00[ASN][1000 genomes]
rs4345571	1.00[ASN][1000 genomes]
rs4368993	1.00[ASN][1000 genomes]
rs4383986	1.00[ASN][1000 genomes]
rs4873140	1.00[ASN][1000 genomes]
rs55736281	1.00[ASN][1000 genomes]
rs57333617	1.00[ASN][1000 genomes]
rs59268471	1.00[ASN][1000 genomes]
rs6985348	1.00[ASN][1000 genomes]
rs6991830	1.00[ASN][1000 genomes]
rs7014050	1.00[ASN][1000 genomes]
rs7014377	1.00[ASN][1000 genomes]
rs73571382	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73573556	1.00[ASN][1000 genomes]
rs73573569	1.00[ASN][1000 genomes]
rs73575356	1.00[ASN][1000 genomes]
rs73575383	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2759613	chr8:50873293-51137995	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2758621	chr8:50886593-51137995	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv611312	chr8:50930075-51011122	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv890871	chr8:50936174-51040022	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv890872	chr8:50946702-51032813	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50981800-50986800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr8:50982600-50987200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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