Variant report

Variant	rs4370937
Chromosome Location	chr11:8745081-8745082
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF263	chr11:8743805-8745256	HEK293-T-REx	kidney:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:8727507..8730425-chr11:8743680..8745466,2	K562	blood:
2	chr11:8734555..8736932-chr11:8744391..8746005,2	K562	blood:
3	chr11:8701660..8705909-chr11:8738922..8746228,9	MCF-7	breast:
4	chr11:8727495..8731170-chr11:8743680..8746137,4	K562	blood:
5	chr11:8741961..8745889-chr11:8746837..8751403,4	MCF-7	breast:
6	chr11:8709690..8711346-chr11:8743224..8745184,2	K562	blood:
7	chr11:8739926..8741501-chr11:8743026..8745396,2	MCF-7	breast:

No data

Variant related genes	Relation type
ST5	TF binding region
ENSG00000166444	Chromatin interaction
ENSG00000166441	Chromatin interaction
ENSG00000200983	Chromatin interaction

rs_ID	r²[population]
rs10743086	0.87[CEU][hapmap]
rs10840119	0.87[CEU][hapmap]
rs10840120	0.88[CEU][hapmap]
rs11042052	0.91[CEU][hapmap];0.86[EUR][1000 genomes]
rs11042064	0.88[CEU][hapmap]
rs12269980	0.88[CEU][hapmap]
rs12287694	0.88[CEU][hapmap]
rs12420964	0.88[CEU][hapmap]
rs16906037	0.88[CEU][hapmap]
rs2316863	0.82[CEU][hapmap]
rs3763917	0.88[CEU][hapmap]
rs3913547	0.88[CEU][hapmap]
rs4082668	0.88[CEU][hapmap]
rs4929918	0.82[CEU][hapmap]
rs61875931	0.83[EUR][1000 genomes]
rs6484007	0.94[CEU][hapmap];0.83[EUR][1000 genomes]
rs7105372	0.94[CEU][hapmap];0.85[EUR][1000 genomes]

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8723800-8745200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr11:8734800-8746800	Genic enhancers	Fetal Intestine Small	intestine
3	chr11:8735400-8745600	Enhancers	Right Atrium	heart
4	chr11:8735400-8753400	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr11:8735600-8748200	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr11:8736000-8745400	Genic enhancers	Fetal Stomach	stomach
7	chr11:8736200-8773800	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr11:8738000-8746800	Enhancers	Stomach Mucosa	stomach
9	chr11:8738800-8745400	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr11:8739200-8745200	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr11:8739200-8745400	Enhancers	Brain Hippocampus Middle	brain
12	chr11:8739200-8745600	Enhancers	Duodenum Smooth Muscle	Duodenum
13	chr11:8739400-8745200	Enhancers	Left Ventricle	heart
14	chr11:8739400-8746000	Enhancers	Fetal Intestine Large	intestine
15	chr11:8739400-8750200	Weak transcription	Brain Germinal Matrix	brain
16	chr11:8739800-8745200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr11:8740400-8745200	Enhancers	Liver	Liver
18	chr11:8740600-8746400	Enhancers	Rectal Mucosa Donor 31	rectum
19	chr11:8740800-8745400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
20	chr11:8740800-8746400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr11:8740800-8748200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr11:8741000-8746800	Genic enhancers	Fetal Muscle Leg	muscle
23	chr11:8741400-8745400	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr11:8741400-8745400	Genic enhancers	HSMM	muscle
25	chr11:8741400-8745600	Enhancers	Skeletal Muscle Male	skeletal muscle
26	chr11:8741600-8745200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr11:8741600-8745200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr11:8742000-8746400	Enhancers	Rectal Smooth Muscle	rectum
29	chr11:8742200-8746000	Enhancers	HUES64 Cell Line	embryonic stem cell
30	chr11:8742200-8746800	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr11:8742200-8749200	Weak transcription	Fetal Brain Male	brain
32	chr11:8742400-8745600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr11:8742400-8748400	Weak transcription	Aorta	Aorta
34	chr11:8742400-8750200	Weak transcription	Psoas Muscle	Psoas
35	chr11:8742600-8745600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
36	chr11:8742600-8746200	Enhancers	H1 Cell Line	embryonic stem cell
37	chr11:8742600-8754000	Weak transcription	Hela-S3	cervix
38	chr11:8742800-8745600	Enhancers	Spleen	Spleen
39	chr11:8743000-8746600	Enhancers	iPS-18 Cell Line	embryonic stem cell
40	chr11:8743200-8746600	Genic enhancers	Cortex derived primary cultured neurospheres	brain
41	chr11:8743400-8745400	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr11:8743400-8746800	Genic enhancers	Duodenum Mucosa	Duodenum
43	chr11:8743600-8745200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr11:8743600-8745400	Enhancers	Right Ventricle	heart
45	chr11:8743600-8746200	Genic enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr11:8743600-8746200	Weak transcription	Brain Cingulate Gyrus	brain
47	chr11:8743800-8745200	Weak transcription	HUES48 Cell Line	embryonic stem cell
48	chr11:8743800-8745200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
49	chr11:8744000-8745200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
50	chr11:8744000-8745200	Weak transcription	Brain Angular Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links