Variant report

Variant	rs61875931
Chromosome Location	chr11:8744648-8744649
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF263	chr11:8743805-8745256	HEK293-T-REx	kidney:	n/a	n/a
2	ZNF263	chr11:8744332-8745023	K562	blood:	n/a	n/a

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:8727507..8730425-chr11:8743680..8745466,2	K562	blood:
2	chr11:8742403..8744677-chr11:8890924..8893449,2	MCF-7	breast:
3	chr11:8734555..8736932-chr11:8744391..8746005,2	K562	blood:
4	chr11:8701660..8705909-chr11:8738922..8746228,9	MCF-7	breast:
5	chr11:8727495..8731170-chr11:8743680..8746137,4	K562	blood:
6	chr11:8741961..8745889-chr11:8746837..8751403,4	MCF-7	breast:
7	chr11:8709069..8714690-chr11:8738952..8744779,10	MCF-7	breast:
8	chr11:8709690..8711346-chr11:8743224..8745184,2	K562	blood:
9	chr11:8739926..8741501-chr11:8743026..8745396,2	MCF-7	breast:
10	chr11:8733189..8735360-chr11:8741990..8744947,2	K562	blood:

No data

Variant related genes	Relation type
ST5	TF binding region
ENSG00000200983	Chromatin interaction
ENSG00000166441	Chromatin interaction
ENSG00000166444	Chromatin interaction

rs_ID	r²[population]
rs10743086	0.88[EUR][1000 genomes]
rs10840119	0.84[EUR][1000 genomes]
rs10840120	0.86[EUR][1000 genomes]
rs10840122	0.80[EUR][1000 genomes]
rs11042052	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11042064	0.87[EUR][1000 genomes]
rs12420964	0.80[EUR][1000 genomes]
rs3913547	0.87[EUR][1000 genomes]
rs4370937	0.83[EUR][1000 genomes]
rs55902154	0.84[EUR][1000 genomes]
rs6484007	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7105372	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8723800-8745200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr11:8734800-8746800	Genic enhancers	Fetal Intestine Small	intestine
3	chr11:8735400-8744800	Enhancers	Adipose Nuclei	Adipose
4	chr11:8735400-8745600	Enhancers	Right Atrium	heart
5	chr11:8735400-8753400	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr11:8735600-8748200	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr11:8736000-8745400	Genic enhancers	Fetal Stomach	stomach
8	chr11:8736200-8773800	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr11:8738000-8746800	Enhancers	Stomach Mucosa	stomach
10	chr11:8738400-8744800	Enhancers	Fetal Heart	heart
11	chr11:8738800-8744800	Enhancers	Lung	lung
12	chr11:8738800-8745400	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr11:8739200-8744800	Enhancers	Ovary	ovary
14	chr11:8739200-8745200	Enhancers	Brain Inferior Temporal Lobe	brain
15	chr11:8739200-8745400	Enhancers	Brain Hippocampus Middle	brain
16	chr11:8739200-8745600	Enhancers	Duodenum Smooth Muscle	Duodenum
17	chr11:8739400-8745200	Enhancers	Left Ventricle	heart
18	chr11:8739400-8746000	Enhancers	Fetal Intestine Large	intestine
19	chr11:8739400-8750200	Weak transcription	Brain Germinal Matrix	brain
20	chr11:8739800-8744800	Enhancers	Placenta Amnion	Placenta Amnion
21	chr11:8739800-8745200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr11:8740400-8745200	Enhancers	Liver	Liver
23	chr11:8740600-8746400	Enhancers	Rectal Mucosa Donor 31	rectum
24	chr11:8740800-8745400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
25	chr11:8740800-8746400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr11:8740800-8748200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr11:8741000-8746800	Genic enhancers	Fetal Muscle Leg	muscle
28	chr11:8741400-8745000	Enhancers	Colon Smooth Muscle	Colon
29	chr11:8741400-8745400	Enhancers	Skeletal Muscle Female	skeletal muscle
30	chr11:8741400-8745400	Genic enhancers	HSMM	muscle
31	chr11:8741400-8745600	Enhancers	Skeletal Muscle Male	skeletal muscle
32	chr11:8741600-8745200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr11:8741600-8745200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr11:8741800-8744800	Enhancers	NHDF-Ad	bronchial
35	chr11:8742000-8746400	Enhancers	Rectal Smooth Muscle	rectum
36	chr11:8742200-8744800	Genic enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr11:8742200-8745000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr11:8742200-8746000	Enhancers	HUES64 Cell Line	embryonic stem cell
39	chr11:8742200-8746800	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr11:8742200-8749200	Weak transcription	Fetal Brain Male	brain
41	chr11:8742400-8745000	Enhancers	Small Intestine	intestine
42	chr11:8742400-8745600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr11:8742400-8748400	Weak transcription	Aorta	Aorta
44	chr11:8742400-8750200	Weak transcription	Psoas Muscle	Psoas
45	chr11:8742600-8745000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr11:8742600-8745600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
47	chr11:8742600-8746200	Enhancers	H1 Cell Line	embryonic stem cell
48	chr11:8742600-8754000	Weak transcription	Hela-S3	cervix
49	chr11:8742800-8745600	Enhancers	Spleen	Spleen
50	chr11:8743000-8746600	Enhancers	iPS-18 Cell Line	embryonic stem cell

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