Variant report

Variant	rs10743086
Chromosome Location	chr11:8774923-8774924
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:8770175..8772021-chr11:8774328..8776662,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10743090	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10769961	0.82[CEU][hapmap]
rs10840119	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10840120	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10840122	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10840124	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11042052	0.88[CEU][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11042064	1.00[CEU][hapmap];0.88[CHB][hapmap];0.91[JPT][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11042074	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12269980	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap]
rs12287694	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12289240	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12291552	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12296005	0.82[CHB][hapmap]
rs12420964	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16906037	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2316863	0.82[CEU][hapmap]
rs3763917	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3763919	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs3913547	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4082668	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4370937	0.87[CEU][hapmap]
rs4929918	0.82[CEU][hapmap]
rs55902154	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60869409	0.81[EUR][1000 genomes]
rs61875931	0.88[EUR][1000 genomes]
rs6484007	0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6484606	0.88[CEU][hapmap]
rs7105372	0.93[CEU][hapmap];0.88[CHB][hapmap];0.91[JPT][hapmap];0.88[EUR][1000 genomes]
rs7131166	0.87[CEU][hapmap]
rs72858278	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10743086	TMEM9B	cis	Esophagus Muscularis	GTEx

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8746600-8783000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:8752600-8775200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr11:8753000-8780600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr11:8754600-8778400	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr11:8755200-8778200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr11:8755600-8777200	Weak transcription	Psoas Muscle	Psoas
7	chr11:8755800-8780800	Weak transcription	Brain Cingulate Gyrus	brain
8	chr11:8756000-8776000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr11:8757400-8777400	Weak transcription	Adipose Nuclei	Adipose
10	chr11:8757800-8777800	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr11:8759800-8775600	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr11:8762000-8778200	Weak transcription	Aorta	Aorta
13	chr11:8762800-8778000	Weak transcription	Ovary	ovary
14	chr11:8763400-8781000	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr11:8767000-8779800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr11:8767800-8777400	Weak transcription	NH-A	brain
17	chr11:8769000-8776000	Weak transcription	NHDF-Ad	bronchial
18	chr11:8769200-8778800	Weak transcription	Fetal Kidney	kidney
19	chr11:8769400-8781000	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr11:8771000-8777400	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr11:8771200-8776600	Weak transcription	Esophagus	oesophagus
22	chr11:8771200-8777400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr11:8771200-8778000	Weak transcription	Fetal Heart	heart
24	chr11:8771200-8778200	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr11:8771200-8778200	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr11:8771200-8778200	Weak transcription	HepG2	liver
27	chr11:8771200-8778800	Weak transcription	Stomach Mucosa	stomach
28	chr11:8771400-8777000	Weak transcription	Osteobl	bone
29	chr11:8771400-8777400	Weak transcription	Fetal Intestine Small	intestine
30	chr11:8771400-8777400	Weak transcription	Pancreas	Pancrea
31	chr11:8771400-8778000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr11:8771400-8779600	Weak transcription	Gastric	stomach
33	chr11:8771600-8777800	Weak transcription	Placenta Amnion	Placenta Amnion
34	chr11:8772000-8775800	Weak transcription	HSMM	muscle
35	chr11:8772000-8776400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr11:8772000-8776600	Weak transcription	Right Atrium	heart
37	chr11:8772000-8777400	Weak transcription	HSMMtube	muscle
38	chr11:8772000-8778000	Weak transcription	Duodenum Mucosa	Duodenum
39	chr11:8772200-8776400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr11:8772200-8778800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr11:8772200-8781200	Weak transcription	Lung	lung
42	chr11:8772200-8782600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr11:8772400-8775000	Weak transcription	Fetal Intestine Large	intestine
44	chr11:8772400-8775200	Weak transcription	HMEC	breast
45	chr11:8772400-8775400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr11:8772400-8776200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr11:8772400-8776600	Weak transcription	Liver	Liver
48	chr11:8772400-8777000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr11:8772400-8777200	Weak transcription	Right Ventricle	heart
50	chr11:8772400-8777400	Weak transcription	Colon Smooth Muscle	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links