Variant report

Variant	rs72858278
Chromosome Location	chr11:8778186-8778187
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:8775891..8778545-chr11:8784812..8786511,2	K562	blood:
2	chr11:8776493..8778441-chr11:8825146..8827348,2	MCF-7	breast:
3	chr11:8702183..8705528-chr11:8775853..8778688,3	K562	blood:

Variant related genes	Relation type
ENSG00000166441	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10743086	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10743090	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10840119	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10840120	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10840122	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10840124	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11042064	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11042074	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12287694	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12289240	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12291552	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12420964	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16906037	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3763917	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3763919	0.91[ASN][1000 genomes]
rs3913547	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4082668	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs55902154	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6484007	0.82[ASN][1000 genomes]

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8746600-8783000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:8753000-8780600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr11:8754600-8778400	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr11:8755200-8778200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr11:8755800-8780800	Weak transcription	Brain Cingulate Gyrus	brain
6	chr11:8762000-8778200	Weak transcription	Aorta	Aorta
7	chr11:8763400-8781000	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr11:8767000-8779800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr11:8769200-8778800	Weak transcription	Fetal Kidney	kidney
10	chr11:8769400-8781000	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr11:8771200-8778200	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr11:8771200-8778200	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr11:8771200-8778200	Weak transcription	HepG2	liver
14	chr11:8771200-8778800	Weak transcription	Stomach Mucosa	stomach
15	chr11:8771400-8779600	Weak transcription	Gastric	stomach
16	chr11:8772200-8778800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr11:8772200-8781200	Weak transcription	Lung	lung
18	chr11:8772200-8782600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr11:8772400-8778200	Weak transcription	Spleen	Spleen
20	chr11:8772400-8778800	Weak transcription	NHEK	skin
21	chr11:8772400-8780400	Weak transcription	Placenta	Placenta
22	chr11:8772400-8782800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr11:8772400-8787000	Weak transcription	Brain Hippocampus Middle	brain
24	chr11:8772400-8788400	Weak transcription	Hela-S3	cervix
25	chr11:8772600-8778400	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr11:8775400-8780000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr11:8775400-8782800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr11:8775600-8778600	Weak transcription	HMEC	breast
29	chr11:8776000-8779400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr11:8776000-8781800	Enhancers	NHDF-Ad	bronchial
31	chr11:8776200-8778800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr11:8776600-8779000	Enhancers	Right Atrium	heart
33	chr11:8777000-8779400	Enhancers	Osteobl	bone
34	chr11:8777000-8780200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr11:8777000-8781200	Weak transcription	Fetal Lung	lung
36	chr11:8777200-8778400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr11:8777200-8778600	Enhancers	Breast Myoepithelial Primary Cells	Breast
38	chr11:8777200-8779200	Enhancers	Right Ventricle	heart
39	chr11:8777200-8779200	Genic enhancers	HSMM	muscle
40	chr11:8777200-8782200	Enhancers	Psoas Muscle	Psoas
41	chr11:8777400-8778200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr11:8777400-8779000	Enhancers	Muscle Satellite Cultured Cells	--
43	chr11:8777400-8779200	Enhancers	HSMMtube	muscle
44	chr11:8777400-8779400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr11:8777400-8779600	Enhancers	Adipose Nuclei	Adipose
46	chr11:8777400-8780000	Enhancers	NH-A	brain
47	chr11:8777400-8780200	Enhancers	Pancreas	Pancrea
48	chr11:8777400-8780400	Enhancers	Stomach Smooth Muscle	stomach
49	chr11:8777400-8780600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr11:8777400-8780600	Enhancers	Colon Smooth Muscle	Colon

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