Variant report

Variant	rs6484007
Chromosome Location	chr11:8753717-8753718
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:8746386..8749043-chr11:8752084..8753832,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166444	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10743086	0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10840119	0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10840120	0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11042052	1.00[CEU][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11042064	0.94[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap];0.86[EUR][1000 genomes]
rs12269980	0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs12287694	0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs12420964	0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs16906037	0.94[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap]
rs3763917	0.94[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap]
rs3763919	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs3913547	0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs4082668	0.94[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap]
rs4370937	0.94[CEU][hapmap];0.83[EUR][1000 genomes]
rs55902154	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61875931	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6484606	0.83[CEU][hapmap]
rs7105372	1.00[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7131166	0.82[CEU][hapmap]
rs72858278	0.82[ASN][1000 genomes]

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8736200-8773800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr11:8742600-8754000	Weak transcription	Hela-S3	cervix
3	chr11:8744000-8754200	Weak transcription	A549	lung
4	chr11:8744200-8757600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr11:8745000-8754400	Weak transcription	Small Intestine	intestine
6	chr11:8745600-8754000	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr11:8746000-8754200	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr11:8746200-8757400	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr11:8746400-8757200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr11:8746600-8757200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr11:8746600-8783000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:8747800-8756400	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr11:8748800-8754600	Weak transcription	Fetal Thymus	thymus
14	chr11:8749000-8754200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr11:8749400-8754400	Weak transcription	Duodenum Mucosa	Duodenum
16	chr11:8749400-8754600	Weak transcription	Fetal Kidney	kidney
17	chr11:8750200-8753800	Strong transcription	Fetal Intestine Small	intestine
18	chr11:8750600-8753800	Weak transcription	Brain Cingulate Gyrus	brain
19	chr11:8750600-8754000	Weak transcription	Psoas Muscle	Psoas
20	chr11:8750800-8760200	Weak transcription	Fetal Brain Male	brain
21	chr11:8751200-8754000	Weak transcription	Brain Angular Gyrus	brain
22	chr11:8751400-8753800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr11:8751600-8754000	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr11:8751600-8754000	Weak transcription	Fetal Lung	lung
25	chr11:8751600-8754000	Weak transcription	HepG2	liver
26	chr11:8751600-8754000	Weak transcription	NHEK	skin
27	chr11:8752000-8755800	Enhancers	Right Atrium	heart
28	chr11:8752400-8755200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
29	chr11:8752400-8755400	Weak transcription	K562	blood
30	chr11:8752600-8754600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr11:8752600-8755800	Enhancers	Right Ventricle	heart
32	chr11:8752600-8756000	Enhancers	Primary B cells from peripheral blood	blood
33	chr11:8752600-8769800	Weak transcription	Colonic Mucosa	Colon
34	chr11:8752600-8775200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr11:8752800-8754000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr11:8752800-8754000	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr11:8752800-8755600	Enhancers	Colon Smooth Muscle	Colon
38	chr11:8752800-8755600	Enhancers	HSMMtube	muscle
39	chr11:8752800-8755800	Enhancers	Skeletal Muscle Female	skeletal muscle
40	chr11:8752800-8758600	Enhancers	Left Ventricle	heart
41	chr11:8753000-8753800	Enhancers	Primary B cells from cord blood	blood
42	chr11:8753000-8754000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr11:8753000-8754000	Enhancers	Skeletal Muscle Male	skeletal muscle
44	chr11:8753000-8754200	Enhancers	HSMM	muscle
45	chr11:8753000-8754400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr11:8753000-8755200	Enhancers	Adipose Nuclei	Adipose
47	chr11:8753000-8755200	Enhancers	Aorta	Aorta
48	chr11:8753000-8755600	Genic enhancers	Fetal Muscle Leg	muscle
49	chr11:8753000-8755600	Enhancers	Lung	lung
50	chr11:8753000-8755600	Enhancers	Pancreas	Pancrea

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