Variant report

Variant	rs4374402
Chromosome Location	chr2:74260153-74260154
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:74255973..74258035-chr2:74259195..74261079,2	MCF-7	breast:
2	chr2:74260106..74261716-chr2:74262386..74265335,3	K562	blood:
3	chr2:74255095..74256663-chr2:74259404..74261746,2	K562	blood:
4	chr2:74208596..74210196-chr2:74258606..74261196,2	K562	blood:
5	chr2:74256729..74258629-chr2:74258988..74261900,2	K562	blood:
6	chr2:74258345..74260376-chr2:74295043..74298483,3	K562	blood:
7	chr2:74257577..74261263-chr2:74266569..74269691,3	K562	blood:
8	chr2:74260003..74261827-chr2:74262096..74265346,4	K562	blood:
9	chr2:74235585..74237429-chr2:74259256..74261336,2	K562	blood:
10	chr2:74241720..74243362-chr2:74258400..74261040,2	K562	blood:

No data

Extended variants
information (count: 98 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:96)

rs_ID	r²[population]
rs10164943	0.95[CEU][hapmap];0.86[EUR][1000 genomes]
rs10168249	0.88[EUR][1000 genomes]
rs10168408	0.88[EUR][1000 genomes]
rs10168410	0.88[EUR][1000 genomes]
rs10179967	0.86[EUR][1000 genomes]
rs10188058	1.00[CHB][hapmap]
rs10191539	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs10200470	0.88[EUR][1000 genomes]
rs1025424	1.00[CHB][hapmap]
rs11126424	0.90[EUR][1000 genomes]
rs11683738	1.00[CHB][hapmap]
rs11884748	0.88[EUR][1000 genomes]
rs11885172	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs11886928	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs11898903	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12328927	0.93[EUR][1000 genomes]
rs12713803	0.83[EUR][1000 genomes]
rs12713804	0.91[CEU][hapmap];0.84[EUR][1000 genomes]
rs12713805	0.87[EUR][1000 genomes]
rs12713806	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs12713808	0.87[EUR][1000 genomes]
rs12713809	0.86[EUR][1000 genomes]
rs12713810	0.91[CEU][hapmap];0.83[EUR][1000 genomes]
rs12988533	0.86[EUR][1000 genomes]
rs12991192	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[ASN][1000 genomes]
rs12995468	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13005103	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13006301	0.88[EUR][1000 genomes]
rs13006407	0.90[EUR][1000 genomes]
rs13011961	1.00[CHB][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13013211	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13014576	0.95[CEU][hapmap];0.87[EUR][1000 genomes]
rs13016198	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13019449	1.00[ASN][1000 genomes]
rs13021880	0.87[EUR][1000 genomes]
rs13027288	0.86[EUR][1000 genomes]
rs13027623	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13030414	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13387010	0.88[EUR][1000 genomes]
rs17404009	1.00[CHB][hapmap]
rs17676291	1.00[CHB][hapmap]
rs17725971	1.00[CHB][hapmap]
rs28450901	0.90[EUR][1000 genomes]
rs34136450	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34201525	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35592918	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35609589	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3902790	0.95[CEU][hapmap];0.86[EUR][1000 genomes]
rs4073048	0.86[EUR][1000 genomes]
rs4241260	0.88[EUR][1000 genomes]
rs4270374	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4328662	0.88[EUR][1000 genomes]
rs4331526	1.00[CEU][hapmap];0.85[TSI][hapmap];0.88[EUR][1000 genomes]
rs4364046	1.00[CEU][hapmap];0.87[TSI][hapmap];0.92[EUR][1000 genomes]
rs4371381	0.89[EUR][1000 genomes]
rs4416242	0.93[EUR][1000 genomes]
rs4422181	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4574138	1.00[CEU][hapmap];0.85[TSI][hapmap];0.88[EUR][1000 genomes]
rs4621184	0.87[EUR][1000 genomes]
rs4852326	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs4853003	1.00[CEU][hapmap];0.87[TSI][hapmap];0.89[EUR][1000 genomes]
rs4853005	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs4853006	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs4853007	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs4853009	0.88[EUR][1000 genomes]
rs60279245	0.85[EUR][1000 genomes]
rs6546884	0.85[EUR][1000 genomes]
rs6546885	0.88[EUR][1000 genomes]
rs6546886	0.95[CEU][hapmap];0.85[TSI][hapmap];0.88[EUR][1000 genomes]
rs6546887	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs6706327	0.91[EUR][1000 genomes]
rs6712566	1.00[ASN][1000 genomes]
rs6713313	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6714186	0.87[EUR][1000 genomes]
rs6717896	0.95[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6741544	0.87[EUR][1000 genomes]
rs6743073	0.86[EUR][1000 genomes]
rs6745236	1.00[CEU][hapmap];0.82[TSI][hapmap];0.88[EUR][1000 genomes]
rs6745576	0.95[CEU][hapmap];0.86[EUR][1000 genomes]
rs6745792	1.00[CEU][hapmap];0.82[TSI][hapmap];0.88[EUR][1000 genomes]
rs6754218	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6755711	0.95[CEU][hapmap];0.86[EUR][1000 genomes]
rs6756474	1.00[CEU][hapmap];0.82[TSI][hapmap];0.89[EUR][1000 genomes]
rs71337722	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71406850	1.00[ASN][1000 genomes]
rs7560668	0.95[CEU][hapmap];0.82[TSI][hapmap];0.85[EUR][1000 genomes]
rs7584777	0.86[EUR][1000 genomes]
rs7587991	0.85[EUR][1000 genomes]
rs7589915	0.87[EUR][1000 genomes]
rs7592749	0.85[EUR][1000 genomes]
rs7593050	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7597388	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7601526	1.00[CEU][hapmap];0.82[TSI][hapmap];0.90[EUR][1000 genomes]
rs7606491	0.95[CEU][hapmap];0.82[TSI][hapmap];0.85[EUR][1000 genomes]
rs870722	1.00[CHB][hapmap]
rs9309478	0.95[CEU][hapmap];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3584956	chr2:74197109-74317135	Flanking Active TSS Genic enhancers Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	nsv818048	chr2:74225434-74313080	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:74231600-74273800	Weak transcription	A549	lung
2	chr2:74240000-74276200	Weak transcription	Hela-S3	cervix
3	chr2:74256000-74260200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr2:74256000-74269600	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr2:74256200-74266400	Weak transcription	HepG2	liver
6	chr2:74256400-74260200	Enhancers	Brain Substantia Nigra	brain
7	chr2:74257000-74260200	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr2:74257000-74260400	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr2:74257400-74260200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr2:74257400-74260800	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr2:74257600-74260400	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr2:74257800-74260200	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr2:74257800-74260200	Enhancers	H1 Cell Line	embryonic stem cell
14	chr2:74257800-74260200	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr2:74257800-74260200	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr2:74257800-74260200	Enhancers	Placenta	Placenta
17	chr2:74258000-74260800	Enhancers	Fetal Stomach	stomach
18	chr2:74258200-74260200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr2:74258200-74260400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
20	chr2:74258200-74261000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr2:74258400-74260200	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr2:74258400-74260200	Enhancers	Fetal Heart	heart
23	chr2:74258600-74261600	Enhancers	Fetal Intestine Small	intestine
24	chr2:74258800-74260400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr2:74259000-74260200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
26	chr2:74259000-74260200	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
27	chr2:74259000-74260200	Flanking Active TSS	Fetal Thymus	thymus
28	chr2:74259000-74260400	Flanking Active TSS	Primary hematopoietic stem cells	blood
29	chr2:74259000-74260400	Flanking Active TSS	Thymus	Thymus
30	chr2:74259000-74260400	Enhancers	HSMMtube	muscle
31	chr2:74259000-74260800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
32	chr2:74259200-74260200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr2:74259200-74260200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr2:74259200-74260200	Flanking Active TSS	Primary T cells from cord blood	blood
35	chr2:74259200-74260200	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr2:74259200-74260200	Enhancers	Muscle Satellite Cultured Cells	--
37	chr2:74259200-74260200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr2:74259200-74260200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr2:74259200-74260200	Flanking Active TSS	Duodenum Mucosa	Duodenum
40	chr2:74259200-74260200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
41	chr2:74259200-74260200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
42	chr2:74259200-74260200	Enhancers	Stomach Mucosa	stomach
43	chr2:74259200-74260200	Enhancers	NHEK	skin
44	chr2:74259200-74260400	Enhancers	Fetal Kidney	kidney
45	chr2:74259200-74261000	Enhancers	Fetal Intestine Large	intestine
46	chr2:74259400-74260200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
47	chr2:74259400-74260200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
48	chr2:74259400-74260400	Active TSS	GM12878-XiMat	blood
49	chr2:74259400-74269600	Weak transcription	H9 Cell Line	embryonic stem cell
50	chr2:74259600-74260200	Flanking Active TSS	Sigmoid Colon	Sigmoid Colon

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