Variant report

Variant	rs4389491
Chromosome Location	chr3:161389515-161389516
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs2063835	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4269094	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4856645	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4856708	0.89[ASN][1000 genomes]
rs62279587	0.87[ASN][1000 genomes]
rs62281367	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73166070	0.89[ASN][1000 genomes]
rs73166073	0.89[ASN][1000 genomes]
rs7624747	0.81[CEU][hapmap]
rs7632851	0.89[ASN][1000 genomes]
rs869772	0.89[ASN][1000 genomes]
rs9812690	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9815734	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9824937	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9837035	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9867861	0.89[ASN][1000 genomes]
rs9877005	0.89[ASN][1000 genomes]
rs9881986	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533237	chr3:161019834-161804660	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	91 gene(s)	inside rSNPs	diseases
2	esv2422309	chr3:161242389-161425932	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv877711	chr3:161275848-161486665	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1004255	chr3:161340249-161476537	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161379000-161391600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:161380000-161393200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr3:161386800-161390400	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr3:161388800-161390200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr3:161389400-161389600	Enhancers	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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