Variant report

Variant	rs9867861
Chromosome Location	chr3:161281136-161281137
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:161087613..161089123-chr3:161278946..161281684,2	MCF-7	breast:

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10936229	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs13433795	0.92[EUR][1000 genomes]
rs13434143	0.92[EUR][1000 genomes]
rs1506481	0.92[EUR][1000 genomes]
rs1506482	0.92[EUR][1000 genomes]
rs1506483	0.92[EUR][1000 genomes]
rs1506484	0.92[EUR][1000 genomes]
rs1546394	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1546396	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1546397	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1546398	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1905532	0.88[EUR][1000 genomes]
rs2063835	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34842468	0.92[EUR][1000 genomes]
rs41386047	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs4263306	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4269094	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4389491	0.89[ASN][1000 genomes]
rs4856645	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4856708	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59955550	0.92[EUR][1000 genomes]
rs62278277	0.92[EUR][1000 genomes]
rs62278278	0.92[EUR][1000 genomes]
rs62279585	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62279587	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62281367	0.89[ASN][1000 genomes]
rs6441379	0.92[EUR][1000 genomes]
rs6441380	0.92[EUR][1000 genomes]
rs6441381	0.92[EUR][1000 genomes]
rs6441382	0.92[EUR][1000 genomes]
rs6780612	0.90[EUR][1000 genomes]
rs6781610	0.92[EUR][1000 genomes]
rs6782059	0.92[EUR][1000 genomes]
rs6803152	0.92[EUR][1000 genomes]
rs73166070	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73166073	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7621624	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7624603	0.92[EUR][1000 genomes]
rs7624657	0.92[EUR][1000 genomes]
rs7624747	0.92[EUR][1000 genomes]
rs7632851	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7635683	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7636548	0.92[EUR][1000 genomes]
rs7646635	0.92[EUR][1000 genomes]
rs7648970	0.92[EUR][1000 genomes]
rs869772	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9290079	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs9290085	0.91[EUR][1000 genomes]
rs9811902	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9812690	0.89[ASN][1000 genomes]
rs9813997	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs9815734	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9817212	0.91[EUR][1000 genomes]
rs9817387	0.90[EUR][1000 genomes]
rs9821472	0.91[EUR][1000 genomes]
rs9821882	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9823346	0.90[EUR][1000 genomes]
rs9824937	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9832020	0.92[EUR][1000 genomes]
rs9832179	0.92[EUR][1000 genomes]
rs9832490	0.90[EUR][1000 genomes]
rs9837035	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9847781	0.92[EUR][1000 genomes]
rs9847876	0.92[EUR][1000 genomes]
rs9848624	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9854509	0.91[EUR][1000 genomes]
rs9854709	0.91[EUR][1000 genomes]
rs9859309	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9861927	0.91[EUR][1000 genomes]
rs9866418	0.92[EUR][1000 genomes]
rs9869804	0.92[EUR][1000 genomes]
rs9877005	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9881986	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533237	chr3:161019834-161804660	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	91 gene(s)	inside rSNPs	diseases
2	nsv829773	chr3:161150422-161315189	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv829774	chr3:161229405-161386919	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2422309	chr3:161242389-161425932	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv877711	chr3:161275848-161486665	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161278400-161289400	Weak transcription	Colon Smooth Muscle	Colon
2	chr3:161280400-161281200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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