Variant report

Variant	rs62279587
Chromosome Location	chr3:161296291-161296292
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:161288935..161292971-chr3:161293220..161296787,4	K562	blood:

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10936229	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs13433795	0.91[EUR][1000 genomes]
rs13434143	0.91[EUR][1000 genomes]
rs1506481	0.91[EUR][1000 genomes]
rs1506482	0.91[EUR][1000 genomes]
rs1506483	0.91[EUR][1000 genomes]
rs1506484	0.91[EUR][1000 genomes]
rs1546394	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1546396	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1546397	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1546398	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1905532	0.87[EUR][1000 genomes]
rs2063835	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34842468	0.91[EUR][1000 genomes]
rs41386047	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs4263306	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4269094	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4389491	0.87[ASN][1000 genomes]
rs4856645	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4856708	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59955550	0.91[EUR][1000 genomes]
rs62278277	0.91[EUR][1000 genomes]
rs62278278	0.91[EUR][1000 genomes]
rs62279585	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62281367	0.87[ASN][1000 genomes]
rs6441379	0.91[EUR][1000 genomes]
rs6441380	0.91[EUR][1000 genomes]
rs6441381	0.91[EUR][1000 genomes]
rs6441382	0.91[EUR][1000 genomes]
rs6780612	0.90[EUR][1000 genomes]
rs6781610	0.91[EUR][1000 genomes]
rs6782059	0.91[EUR][1000 genomes]
rs6803152	0.91[EUR][1000 genomes]
rs73166070	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73166073	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7621624	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7624603	0.91[EUR][1000 genomes]
rs7624657	0.91[EUR][1000 genomes]
rs7624747	0.91[EUR][1000 genomes]
rs7632851	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7635683	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7636548	0.91[EUR][1000 genomes]
rs7646635	0.91[EUR][1000 genomes]
rs7648970	0.91[EUR][1000 genomes]
rs869772	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9290079	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs9290085	0.90[EUR][1000 genomes]
rs9811902	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9812690	0.87[ASN][1000 genomes]
rs9813997	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs9815734	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9817212	0.90[EUR][1000 genomes]
rs9817387	0.90[EUR][1000 genomes]
rs9821472	0.90[EUR][1000 genomes]
rs9821882	0.81[AMR][1000 genomes]
rs9823346	0.90[EUR][1000 genomes]
rs9824937	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9832020	0.91[EUR][1000 genomes]
rs9832179	0.91[EUR][1000 genomes]
rs9832490	0.90[EUR][1000 genomes]
rs9837035	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9847781	0.91[EUR][1000 genomes]
rs9847876	0.91[EUR][1000 genomes]
rs9848624	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9854509	0.90[EUR][1000 genomes]
rs9854709	0.90[EUR][1000 genomes]
rs9859309	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9861927	0.90[EUR][1000 genomes]
rs9866418	0.91[EUR][1000 genomes]
rs9867861	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9869804	0.91[EUR][1000 genomes]
rs9877005	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9881986	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533237	chr3:161019834-161804660	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	91 gene(s)	inside rSNPs	diseases
2	nsv829773	chr3:161150422-161315189	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv829774	chr3:161229405-161386919	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2422309	chr3:161242389-161425932	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv877711	chr3:161275848-161486665	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161292000-161299600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr3:161292400-161299200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:161295000-161296400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr3:161295000-161296800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr3:161295000-161297000	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr3:161295000-161297800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr3:161296200-161297000	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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