Variant report

Variant	rs4269094
Chromosome Location	chr3:161362119-161362120
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:161354917..161360014-chr3:161360082..161365935,6	MCF-7	breast:
2	chr3:161354763..161357600-chr3:161359609..161362263,3	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10936229	0.83[CEU][hapmap]
rs13433795	0.83[CEU][hapmap]
rs1506480	0.83[CEU][hapmap];0.84[TSI][hapmap]
rs1506481	0.83[CEU][hapmap]
rs2063835	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs41386047	0.83[CEU][hapmap];0.84[TSI][hapmap]
rs4389491	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4856645	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4856708	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62279585	0.81[ASN][1000 genomes]
rs62279587	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62281367	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6441379	0.83[CEU][hapmap]
rs6441380	0.83[CEU][hapmap];0.84[TSI][hapmap]
rs6441381	0.83[CEU][hapmap]
rs6773923	0.83[CEU][hapmap]
rs6803152	0.82[CEU][hapmap]
rs73166070	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73166073	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7624657	0.83[CEU][hapmap]
rs7624747	0.85[CEU][hapmap]
rs7632851	0.93[ASN][1000 genomes]
rs7636548	0.83[CEU][hapmap]
rs7648970	0.82[CEU][hapmap]
rs869772	0.93[ASN][1000 genomes]
rs872677	0.83[CEU][hapmap];0.84[TSI][hapmap]
rs937811	0.83[CEU][hapmap]
rs9812690	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9815734	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9824937	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9837035	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9847876	0.83[CEU][hapmap];0.84[TSI][hapmap]
rs9854509	0.83[CEU][hapmap]
rs9867861	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9877005	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9881986	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533237	chr3:161019834-161804660	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	91 gene(s)	inside rSNPs	diseases
2	nsv829774	chr3:161229405-161386919	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2422309	chr3:161242389-161425932	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv877711	chr3:161275848-161486665	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1004255	chr3:161340249-161476537	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	esv2755105	chr3:161349991-161371789	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
7	esv2754526	chr3:161353644-161371789	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
8	nsv1012553	chr3:161354221-161371789	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161356000-161362800	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr3:161361200-161363200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr3:161361400-161367200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr3:161361800-161362800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr3:161361800-161363400	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr3:161361800-161367400	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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