Variant report
| Variant | rs62279585 |
|---|---|
| Chromosome Location | chr3:161288583-161288584 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs1450533 | 0.90[EUR][1000 genomes] |
| rs1546394 | 1.00[EUR][1000 genomes] |
| rs1546396 | 1.00[EUR][1000 genomes] |
| rs1546397 | 1.00[EUR][1000 genomes] |
| rs1546398 | 0.99[EUR][1000 genomes] |
| rs1960516 | 0.90[EUR][1000 genomes] |
| rs4263306 | 0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs4269094 | 0.81[ASN][1000 genomes] |
| rs4856708 | 0.84[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs56375427 | 0.90[EUR][1000 genomes] |
| rs62279587 | 0.83[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs62281467 | 0.90[EUR][1000 genomes] |
| rs62281468 | 0.90[EUR][1000 genomes] |
| rs73166070 | 0.84[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs73166073 | 0.84[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs7621624 | 1.00[EUR][1000 genomes] |
| rs7621696 | 0.90[EUR][1000 genomes] |
| rs7632851 | 0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs7635683 | 0.98[EUR][1000 genomes] |
| rs869772 | 0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs9811902 | 0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs9815734 | 0.81[ASN][1000 genomes] |
| rs9821882 | 0.97[EUR][1000 genomes] |
| rs9824937 | 0.81[ASN][1000 genomes] |
| rs9831011 | 0.90[EUR][1000 genomes] |
| rs9837035 | 0.81[ASN][1000 genomes] |
| rs9848624 | 0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs9859309 | 0.98[EUR][1000 genomes] |
| rs9867861 | 0.84[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs9877005 | 0.84[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs9881986 | 0.81[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv533237 | chr3:161019834-161804660 | Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 91 gene(s) | inside rSNPs | diseases |
| 2 | nsv829773 | chr3:161150422-161315189 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv829774 | chr3:161229405-161386919 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | esv2422309 | chr3:161242389-161425932 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv877711 | chr3:161275848-161486665 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:161278400-161289400 | Weak transcription | Colon Smooth Muscle | Colon |
| 2 | chr3:161286800-161294800 | Weak transcription | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
| 3 | chr3:161287000-161294600 | Weak transcription | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
