Variant report

Variant	rs9821882
Chromosome Location	chr3:161228271-161228272
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10936229	0.80[EUR][1000 genomes]
rs13433795	0.80[EUR][1000 genomes]
rs13434143	0.80[EUR][1000 genomes]
rs1450533	0.94[EUR][1000 genomes]
rs1506481	0.80[EUR][1000 genomes]
rs1506482	0.80[EUR][1000 genomes]
rs1506483	0.80[EUR][1000 genomes]
rs1506484	0.80[EUR][1000 genomes]
rs1546394	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1546396	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1546397	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1546398	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1960516	0.94[EUR][1000 genomes]
rs34842468	0.80[EUR][1000 genomes]
rs41386047	0.80[EUR][1000 genomes]
rs4263306	0.97[EUR][1000 genomes]
rs4856708	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs56375427	0.93[EUR][1000 genomes]
rs59955550	0.80[EUR][1000 genomes]
rs62278277	0.80[EUR][1000 genomes]
rs62278278	0.80[EUR][1000 genomes]
rs62279585	0.97[EUR][1000 genomes]
rs62279587	0.81[AMR][1000 genomes]
rs62281467	0.94[EUR][1000 genomes]
rs62281468	0.94[EUR][1000 genomes]
rs6441379	0.80[EUR][1000 genomes]
rs6441380	0.80[EUR][1000 genomes]
rs6441381	0.80[EUR][1000 genomes]
rs6441382	0.80[EUR][1000 genomes]
rs6781610	0.80[EUR][1000 genomes]
rs6782059	0.80[EUR][1000 genomes]
rs6803152	0.80[EUR][1000 genomes]
rs73166070	0.80[EUR][1000 genomes]
rs73166073	0.80[EUR][1000 genomes]
rs7621624	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7621696	0.93[EUR][1000 genomes]
rs7624603	0.80[EUR][1000 genomes]
rs7624657	0.80[EUR][1000 genomes]
rs7624747	0.80[EUR][1000 genomes]
rs7632851	0.95[EUR][1000 genomes]
rs7635683	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7636548	0.80[EUR][1000 genomes]
rs7646635	0.80[EUR][1000 genomes]
rs7648970	0.80[EUR][1000 genomes]
rs869772	0.95[EUR][1000 genomes]
rs9290079	0.80[EUR][1000 genomes]
rs9811902	0.96[EUR][1000 genomes]
rs9813997	0.80[EUR][1000 genomes]
rs9831011	0.94[EUR][1000 genomes]
rs9832020	0.80[EUR][1000 genomes]
rs9832179	0.80[EUR][1000 genomes]
rs9847781	0.80[EUR][1000 genomes]
rs9847876	0.80[EUR][1000 genomes]
rs9848624	0.97[EUR][1000 genomes]
rs9859309	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9866418	0.80[EUR][1000 genomes]
rs9867861	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9869804	0.80[EUR][1000 genomes]
rs9877005	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533237	chr3:161019834-161804660	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	91 gene(s)	inside rSNPs	diseases
2	nsv877710	chr3:161087857-161245414	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	84 gene(s)	inside rSNPs	diseases
3	nsv829773	chr3:161150422-161315189	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161227000-161229800	Enhancers	Dnd41	blood

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