Variant report

Variant	rs4405924
Chromosome Location	chr3:69190931-69190932
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17005392	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17005400	0.83[AMR][1000 genomes]
rs34107395	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs4270510	1.00[MEX][hapmap]
rs4615083	0.83[AMR][1000 genomes]
rs59707513	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6774962	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9878971	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876933	chr3:69059023-69227379	Enhancers Strong transcription Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69178000-69193600	Weak transcription	Psoas Muscle	Psoas
2	chr3:69190400-69194200	Enhancers	Hela-S3	cervix
3	chr3:69190600-69191200	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr3:69190600-69192200	Enhancers	Skeletal Muscle Male	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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