Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs17005291	0.83[EUR][1000 genomes]
rs17005392	0.83[AMR][1000 genomes]
rs17005397	1.00[EUR][1000 genomes]
rs17005400	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4405924	0.83[AMR][1000 genomes]
rs4855355	1.00[EUR][1000 genomes]
rs5017791	1.00[EUR][1000 genomes]
rs5017792	1.00[EUR][1000 genomes]
rs55978846	1.00[EUR][1000 genomes]
rs58798960	1.00[EUR][1000 genomes]
rs59707513	0.83[AMR][1000 genomes]
rs60204248	1.00[EUR][1000 genomes]
rs61207882	1.00[EUR][1000 genomes]
rs6549183	0.83[EUR][1000 genomes]
rs6549186	0.85[AMR][1000 genomes]
rs6765226	0.85[AMR][1000 genomes]
rs6774962	0.83[AMR][1000 genomes]
rs6790345	0.85[AMR][1000 genomes]
rs6805119	0.85[AMR][1000 genomes]
rs7629932	1.00[CEU][hapmap]
rs937863	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9825485	1.00[EUR][1000 genomes]
rs9843043	1.00[CEU][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876933	chr3:69059023-69227379	Enhancers Strong transcription Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv521439	chr3:69171803-69185740	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4615083	AMPD3	trans	lymphoblastoid	RTeQTL

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69175400-69178000	Enhancers	Psoas Muscle	Psoas
2	chr3:69175400-69179200	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr3:69176000-69179000	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr3:69176600-69177800	Weak transcription	Hela-S3	cervix
5	chr3:69177000-69178400	Enhancers	Placenta	Placenta

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