Variant report

Variant	rs6774962
Chromosome Location	chr3:69180218-69180219
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17005392	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17005400	0.83[AMR][1000 genomes]
rs34107395	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs4270510	1.00[MEX][hapmap]
rs4405924	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4615083	0.83[AMR][1000 genomes]
rs59707513	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9878971	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876933	chr3:69059023-69227379	Enhancers Strong transcription Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv521439	chr3:69171803-69185740	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv3463382	chr3:69179577-69181639	Weak transcription Enhancers	lncRNA	n/a	inside rSNPs	diseases
4	esv3463383	chr3:69179577-69181639	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
5	esv19992	chr3:69179922-69181540	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
6	esv1824872	chr3:69179942-69181164	Weak transcription Enhancers	lncRNA	n/a	inside rSNPs	diseases
7	esv1826321	chr3:69179942-69181164	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
8	esv1819006	chr3:69179942-69181552	Weak transcription Enhancers	lncRNA	n/a	inside rSNPs	diseases
9	esv1820751	chr3:69179942-69181552	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
10	esv1821491	chr3:69179942-69181552	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
11	esv1822035	chr3:69179942-69181552	Weak transcription Enhancers	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69178000-69193600	Weak transcription	Psoas Muscle	Psoas
2	chr3:69180000-69180400	Enhancers	GM12878-XiMat	blood
3	chr3:69180200-69180600	Weak transcription	Placenta	Placenta
4	chr3:69180200-69190600	Weak transcription	Skeletal Muscle Female	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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